prot_C-linearis_contig95.16978.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig95.16978.1
Unique Name	prot_C-linearis_contig95.16978.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	108

Homology

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BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.490e-9
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0

Query:   13 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTG 46
            S WQ+LAGGT GGVIGMTVVYPLDT+K RLQT+G
Sbjct:    3 SLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSG 36

[Close]

BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match: A0A6H5K323_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K323_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.070e-8
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0

Query:   13 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLVSRPHVSAGGIRDDV 64
            + WQDL GGTVGGVIG+T V PLDTVK RLQT G  L +   +S+  + + V
Sbjct:    3 TLWQDLTGGTVGGVIGVTAVCPLDTVKSRLQTGGRYLGTVQVLSSMAVHEGV 54

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot

BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JUA4_9PHAE	3.490e-9	82.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K323_9PHAE	4.070e-8	55.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018108	Mitochondrial substrate/solute carrier	PFAM	PF00153	Mito_carr	coord: 13..49 e-value: 7.5E-9 score: 35.4
IPR023395	Mitochondrial carrier domain superfamily	GENE3D	1.50.40.10		coord: 2..75 e-value: 2.5E-7 score: 31.6
IPR023395	Mitochondrial carrier domain superfamily	SUPERFAMILY	103506	Mitochondrial carrier	coord: 13..64
None	No IPR available	TMHMM	TMhelix		coord: 13..35

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig95	contig	C-linearis_contig95:274635..277012 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig95.16978.1	mRNA_C-linearis_contig95.16978.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig95 274625..277075 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig95.16978.1 ID=prot_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=108bp
MEDGREEEAMGASFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLV
SRPHVSAGGIRDDVCRCLRLLRLRQPFPAKVRSLWPKCFFRFPQGRPGGL
VDKPHTF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018108	Mitochondrial_sb/sol_carrier
IPR023395	Mt_carrier_dom_sf