mRNA_C-linearis_contig90.16785.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16785.1
Unique NamemRNA_C-linearis_contig90.16785.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 9.250e-102
Identity = 199/330 (60.30%), Postives = 230/330 (69.70%), Query Frame = 3 
Query:  219 MLRLVIPLALAVGTGTQPTHAFVVAP--HRLVLPPCARSCSSVTGRQAVPLSDRDGSGSAWSHGRERRXXXXXXXXXXXXNGGLS--MRAGRPGRERRVMIEGAGGETRRVERRSRK-PDLKSMRRIGLQAAAAVVVQQEQGVDAQTEE---EQEAIDAQEAAA-LSLAERYEAAQGLKERQMMEEEQAGTVLDQYTQIYIPMDGVVIKKTYGFWTWQVFGLIFIQHFVRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDPHNTKRNEEAEAKAGADGK 1181
            ML LV  LALA+G  T   HAFVV    HR  L  CAR  SS      VP+ D    G A S+ R RR               LS  MR  RPG    V IEG GGETRRV++RSR+ PDL   R+IGLQ AAAVVVQQ++ VD   E+   E + I  +     ++LAE ++A+Q L E  MM+  Q GT+ DQYT++Y+PMDG+VIKKTYGFWTWQVFG IF+QHFVRN++RKGGSLKKTSMSEL WDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDF+CPEC APRS+F+DANDK+DPHN KR E+  A     GK
Sbjct:    1 MLGLV--LALALGANT---HAFVVTTQQHRPALSSCARGQSS----SPVPVGD----GPARSYSRLRRTGGYAVSPSGNTKNRLSTCMRVRRPGGGD-VEIEGVGGETRRVQQRSRRRPDL---RQIGLQTAAAVVVQQDEVVDVAEEQAGAEGDTIGEESGEEFMNLAESFDASQRLVEESMMDP-QTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFGFIFVQHFVRNLVRKGGSLKKTSMSELKWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANVAGPGK 312
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.670e-25
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:  843 QVFGLIFIQHFVRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDPHNTKR-NEEAEAKAGA 1172
            Q+F    I  F    +RKG S+++    EL W+++VTE EH+ EL AY CE+CGYTLFPAR RH+ FF++V+D+ CPECGA +S F D +D  DP N  R  EE EA   A
Sbjct:    7 QIFVPFVIVQFFITWVRKGFSIRRVMAPELKWEYLVTEKEHIKELHAYRCEQCGYTLFPARNRHKKFFEDVKDYTCPECGAAKSEFVDIHDLTDPRNIDRPREELEAALAA 117
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A0G4GWS9_VITBC (Rubredoxin-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWS9_VITBC)

HSP 1 Score: 80.9 bits (198), Expect = 2.210e-13
Identity = 45/95 (47.37%), Postives = 56/95 (58.95%), Query Frame = 3 
Query:  876 VRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDPHNTKRNEEAEA 1160
            V N++ + G+ K+T         I+   E   EL  + CE CGYT+FPARGR   FF +  DFECP CGA +  FYD ND DDPHN K  EE E+
Sbjct:  114 VLNLVTRSGA-KRTKA-------IIKTEEDAKELHRFTCENCGYTIFPARGREGKFFGD--DFECPVCGAKKEHFYDGNDPDDPHN-KAPEEGES 197
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A7S2D095_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D095_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 2.980e-12
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 3 
Query:  819 KTYGFWTWQVFGLIFIQHFVRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDP 1127
            KT   WT  +F L+ ++  VR  +   G+L+     E N+ +I        EL  +CCE CGYT+FPARGR   FF +   F+CP C +P+ +F+D  D  DP
Sbjct:  121 KTSFLWTGIIFTLLIVK-IVR--MAAAGNLRAAFFEEPNYKYIARSDAEEAELHEFCCETCGYTMFPARGREGKFFPDA--FKCPNCDSPKESFFDMTDLSDP 218
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A8J6CCP8_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCP8_DIALT)

HSP 1 Score: 72.0 bits (175), Expect = 1.170e-10
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:  972 ELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDPHNTKRNEEAEAKA 1166
            ELKA+ CE CGY L+PARGR   FF +   F+CP C +P+ +FYD ND +DP N + ++E  A A
Sbjct:  144 ELKAFKCENCGYELYPARGREGKFFPDT--FKCPMCKSPKESFYDMNDANDPRNWEEDDENGADA 206
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A7J7IMV8_9RHOD (Rubredoxin-like domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMV8_9RHOD)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-10
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:  828 GFWTWQVFGLIFIQHFVRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDPHNTKRNEE 1151
             FW      ++F+     N++R+    KK     +  +    E +   EL  Y C +CGYTL+PARGR   FF +   F+CP+C AP+S F+D ND +DP N + +EE
Sbjct:  140 AFWFLMGIFIVFL-----NVLRRLVRRKKAENVPIGSEKYRAESDE--ELHVYRCGQCGYTLYPARGRELKFFPKT--FKCPQCSAPKSEFWDLNDPNDPRNQETDEE 238
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A7S1U8S4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.440e-7
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 3 
Query:  858 IFIQHFVRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLE--LKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDPHN 1133
            +F+   VR I  K    KK    E NWD    +    +E  L  + CE+CG+T++PARGR   FF +   F CP C A + +FYD ND  DP N
Sbjct:  117 LFVARTVRQI--KDKIWKK----EPNWDAAELQATGEVEDVLHMFRCEDCGFTIYPARGREGKFFPKG--FTCPNCSASQESFYDLNDPTDPRN 202
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: M2WXM4_GALSU (Rubredoxin-like domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WXM4_GALSU)

HSP 1 Score: 57.8 bits (138), Expect = 9.930e-6
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 3 
Query:  945 IVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDAND 1115
            I+ E +    L  + C  CGY+LFPA+GR   FF   + F+CP CG+ + AFYD +D
Sbjct:  143 ILEEEQENSALHVFKCANCGYSLFPAKGREFKFF--TDSFKCPACGSTKEAFYDTSD 197
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A0G4FDK8_9ALVE (Rubredoxin-like domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FDK8_9ALVE)

HSP 1 Score: 58.9 bits (141), Expect = 1.160e-5
Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 3 
Query:  876 VRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDDPHNTK 1139
            V  +   GGS + T+        IV     +  L  Y C  C Y + PA GR + F+    +  CPECGAP+ AF+DAND  DP + +
Sbjct:  128 VGTVFGGGGSARTTA--------IVKTDSDMKLLHKYVCSNCEYHIMPAIGREKKFYKP--ELGCPECGAPKEAFFDANDLSDPRSVE 205
[Close]
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Match: A0A7S0E573_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E573_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 1.210e-5
Identity = 37/99 (37.37%), Postives = 48/99 (48.48%), Query Frame = 3 
Query:  828 GFWTWQVFGLIFIQHFVRNIIRKGGSLKKTSMSELNWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDKDD 1124
            GF+T  +F  + I   V  I R G S+      E     +  E E    L  + CE+CG+TLFPARGR   FF +   F CP C A +  F+D  D  D
Sbjct:  111 GFFT--IFMCVIINRIVL-IARFGPSMGLNKGDEFKAGSVEEEAE----LHEFVCEDCGFTLFPARGREGKFFSDS--FRCPTCNAAKEKFFDLTDVTD 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FMS9_ECTSI9.250e-10260.30Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A836CG96_9STRA1.670e-2550.45Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A0G4GWS9_VITBC2.210e-1347.37Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S2D095_9EUKA2.980e-1238.83Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A8J6CCP8_DIALT1.170e-1050.77Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7J7IMV8_9RHOD1.380e-1037.04Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S1U8S4_9STRA1.440e-740.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
M2WXM4_GALSU9.930e-643.86Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A0G4FDK8_9ALVE1.160e-536.36Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S0E573_9EUKA1.210e-537.37Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:576532..583632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue2.7e-86
Seed eggNOG ortholog2880.D7FMS9
Hectar predicted targeting categorychloroplast
EggNOG OGs2CZ9B@1,2S968@2759
Ec32 ortholog descriptionRubredoxin-type fold
Ec32 orthologEc-21_000280.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1962
Cds size1218
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16785.1prot_C-linearis_contig90.16785.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 576750..583106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.917322-UTR-C-linearis_contig90:576531..5767491622930776.917322-UTR-C-linearis_contig90:576531..576749Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 576532..576749 +
1690881244.657748-UTR-C-linearis_contig90:576531..5767491690881244.657748-UTR-C-linearis_contig90:576531..576749Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 576532..576749 +
1622930777.077914-UTR-C-linearis_contig90:583106..5836321622930777.077914-UTR-C-linearis_contig90:583106..583632Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 583107..583632 +
1690881244.7523324-UTR-C-linearis_contig90:583106..5836321690881244.7523324-UTR-C-linearis_contig90:583106..583632Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 583107..583632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.9324322-CDS-C-linearis_contig90:576749..5768761622930776.9324322-CDS-C-linearis_contig90:576749..576876Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 576750..576876 +
1690881244.6680937-CDS-C-linearis_contig90:576749..5768761690881244.6680937-CDS-C-linearis_contig90:576749..576876Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 576750..576876 +
1622930776.9528575-CDS-C-linearis_contig90:578240..5784881622930776.9528575-CDS-C-linearis_contig90:578240..578488Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 578241..578488 +
1690881244.67718-CDS-C-linearis_contig90:578240..5784881690881244.67718-CDS-C-linearis_contig90:578240..578488Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 578241..578488 +
1622930776.9717202-CDS-C-linearis_contig90:579362..5795661622930776.9717202-CDS-C-linearis_contig90:579362..579566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 579363..579566 +
1690881244.687432-CDS-C-linearis_contig90:579362..5795661690881244.687432-CDS-C-linearis_contig90:579362..579566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 579363..579566 +
1622930776.9863617-CDS-C-linearis_contig90:580103..5802021622930776.9863617-CDS-C-linearis_contig90:580103..580202Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 580104..580202 +
1690881244.700539-CDS-C-linearis_contig90:580103..5802021690881244.700539-CDS-C-linearis_contig90:580103..580202Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 580104..580202 +
1622930777.0184038-CDS-C-linearis_contig90:580810..5809401622930777.0184038-CDS-C-linearis_contig90:580810..580940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 580811..580940 +
1690881244.712683-CDS-C-linearis_contig90:580810..5809401690881244.712683-CDS-C-linearis_contig90:580810..580940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 580811..580940 +
1622930777.0345714-CDS-C-linearis_contig90:581151..5812641622930777.0345714-CDS-C-linearis_contig90:581151..581264Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 581152..581264 +
1690881244.7239838-CDS-C-linearis_contig90:581151..5812641690881244.7239838-CDS-C-linearis_contig90:581151..581264Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 581152..581264 +
1622930777.0479987-CDS-C-linearis_contig90:581780..5819061622930777.0479987-CDS-C-linearis_contig90:581780..581906Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 581781..581906 +
1690881244.7321334-CDS-C-linearis_contig90:581780..5819061690881244.7321334-CDS-C-linearis_contig90:581780..581906Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 581781..581906 +
1622930777.0600436-CDS-C-linearis_contig90:582935..5831061622930777.0600436-CDS-C-linearis_contig90:582935..583106Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 582936..583106 +
1690881244.7413788-CDS-C-linearis_contig90:582935..5831061690881244.7413788-CDS-C-linearis_contig90:582935..583106Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 582936..583106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16785.1

>prot_C-linearis_contig90.16785.1 ID=prot_C-linearis_contig90.16785.1|Name=mRNA_C-linearis_contig90.16785.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=406bp
MLRLVIPLALAVGTGTQPTHAFVVAPHRLVLPPCARSCSSVTGRQAVPLS
DRDGSGSAWSHGRERRDRSSNANVNGNANGGLSMRAGRPGRERRVMIEGA
GGETRRVERRSRKPDLKSMRRIGLQAAAAVVVQQEQGVDAQTEEEQEAID
AQEAAALSLAERYEAAQGLKERQMMEEEQAGTVLDQYTQIYIPMDGVVIK
KTYGFWTWQVFGLIFIQHFVRNIIRKGGSLKKTSMSELNWDHIVTEPEHL
LELKAYCCEECGYTLFPARGRHEVFFDEVEDFECPECGAPRSAFYDANDK
DDPHNTKRNEEAEAKAGADGKGGGADDDNAGGVVASAAAGASSSVADAKS
PSAMTTTAPVSPSAPASSTPESKAAPPEAKTGETSPPPDNTRPDGDDDGD
DLLDL*
back to top

mRNA from alignment at C-linearis_contig90:576532..583632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16785.1 ID=mRNA_C-linearis_contig90.16785.1|Name=mRNA_C-linearis_contig90.16785.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7101bp|location=Sequence derived from alignment at C-linearis_contig90:576532..583632+ (Chordaria linearis ClinC8C monoicous)
TTTACATAGTACCCCAAACAAATAATGTTTGTTCAGAGACCCCGGGTTGG
AGACGCATCGGGTGACGGACACGTGCCAACACACATCATCAAGTGACGAA
AGGAAAAGAGGAGAGCCGCGAAGAGACGTTACAGCGGTGTTCCTGGCGCG
GAGCCTTGCGCTGACGTGAGACGCGTGTGTCGTGAAGGAGGCATCCGCCT
CTTGTTTTGTCAGCCGCCATGCTACGTCTTGTGATCCCGCTCGCTCTAGC
CGTAGGAACCGGCACTCAGCCGACCCACGCGTTCGTGGTTGCCCCGCACC
GACTGGTGCTCCCGCCATGCGCGCGAAGTTGCAGCTCTGTCACAGGTGAG
AGATAAGTGATTTCGCGTAATTTTTGTTTCTAGAGATGTTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTTGCTGTTGCCCACACCACCGCACGCATGCTT
GTGGTCGGCAACATACTACACACACACGTACCCGTACATACACACGTCGG
CCGTTCGTGTGTTGGTCTTGTTGCCCAATCCTATACGTCTTTTGGTCGAT
GCTGCTCTTTTTGGCCCCTTCTGTTGAAAAAAGTGTGTGTGTTGTTTGGG
CGAGGTGTGGTTCATTCTGTACATCCCTTACTGCTGTACCGATTCGGGGA
CACATGTACTGCTGTAGATACCAAGGAGGTGATGTGTGTGCTGATCCCTC
TCTCGTGCCAAAACAGCAACACACCACCGCACGCTGGCACTGCTTTGATC
ACCCAATCAATGGCGGCTGACTGTATGGGTTCGCTCCGCTTGATCATTGC
ATCGCATTTGAGCGCGATCACCGCCACCTCTGCTCTGTCCTCTTTGAGCC
TGTGCGAACTAAACTAATTTCACATCCATCTCAGTGAGCAACTAATAACC
GTTTAACCTCCTCTCGAAAAGCGAAAAGAAAAGAGAGAGCAAACGAGGGT
GCTCTTGCTCGCCTCGCCTCTGCCCCCCATTGACTACGCAGCCGTGGCCA
GACAGACATCATCGTCGAACCACTCTCAGTGAGCGGCACAAGAGGCAATT
TGGGCCGCAACAAACTTTGGTTCCTTCAGTCATACAGCATGCATGCAACG
CAAGGTTGAAGGCGAAATACGAAATACGCTATTGGTTTCACGTATTCACC
GGTACTCGTAGATGGCTTCCATGTAGCGCCCTCACCCCCAATAATAACAG
GCCTTATTCCGAGCTGGTGATCAATGTAGTAGAACAAGCCTATCCGAGAT
TGGATGCTGTTGCCTGCCTGTCGTTCTTCGCGGTTGGAAAAAAAAAAAAG
AGAAAATAGATGAGCCAACCTTCAATAGTTTGGGCTGGCTGAGACAAAGG
ATACGGATACGCCACCATACCATACATACATGTCCCGGACGGTATCGATT
GCCGATTCGATTGCACTGACAGCAGTCTAGCCACCATCCAGTGTGGGTAA
CGTTGAAAATGTATGATAAAGCACCCATGGTTCGAGATATGCTACATACT
GGTACCAATTTGTTTTGACCACCCCCTCTCCTCTCCTCTCCTCTCCTCTC
CTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTC
GGTTGCCTTTCCTTTCCTTGTCTTCCCTTGTCTTCCCTGGTCTTACCTTG
CCCCTTGCCGCGGTCAACACGACACGACACAACAACACAACATAATACAA
CACCCACAGGCCGACAAGCAGTGCCCCTCAGCGATCGAGACGGCTCGGGC
TCGGCTTGGAGCCACGGGAGGGAAAGGAGAGACAGAAGCAGCAATGCGAA
CGTTAATGGTAACGCTAATGGTGGCCTTTCTATGCGCGCCGGGAGACCTG
GCAGGGAGCGCCGTGTGATGATCGAGGGGGCGGGGGGGGAGACACGACGG
GTGGAACGGCGTTCGAGAAAGCCGGACTTGAAGTCAATGCGGAGGATTGG
CCTGCAGGTGCGGTGTATGGCGCGAAGGCCGCTTTTTTTCGACGCAGTTT
GTCCGCAGCAGTAGATTAGTAAGAATGCTTGCGTTTGCTGGTACTACTGC
TGTAGTGCGTCCGTGTCCCAGGGACACTGAGTTGCAGACAAGGAGGGGGG
GGGGGTAAATCAAGCGCTTCCAGCTTCCAGCGACATGGAAGAGCGTGGTT
TCGCCGGAGGGGTAGGTGCATACGCTTAGAAATTCAAAATTCCATGTTGT
CGTGAGATGAGATGGAGCTTAGTCTGTTATAGTTGTCATGGGTGGGATGG
GAGTTTTAGCGAGCCTCTCGTGTGGCTCTTCCTGCGTCATCCCTGCCACC
TTGAGCATGGTCTTTTTTTATTGGAAGATAAGATGCCTAGGCCGGCAGGA
GTTGGTGTTGCGGCAATCTGGGGTACATGTCCTTTCCTCCCACCAAACCG
CACAGCAGTAGACGAGATTGGATGTGGTGCGTGTGGTGTGTGGTGTGTGG
TGTGTGGTGGTGTGGCATCTGCCGGCATACTTGGTATTTCCGAGTGTCAC
GCGGATATTCCATTTCAGTAGGTATGTAGTGGGTGGTGATGGTGGTGTTT
ATATTTTTCACCGTGTGAGACAAATTGCCTTGCAATCTTGCAATCTTGCA
GATTGTTCGGCCTGTTTCTGGTGGTGTCAATATCATCACCAGTGGCATGC
GTGGAATCGGCCTACTTCCCAAATTGCGCATGCGTTCCTCCAATCCACAG
CTTGTCTGGTCAACGTCAACGTCAATATCCGCGTTACCCTTTCCTGTCCC
TGTCCGTTCTGGTGGTTGTTGTTGTTGTCGTTTTTTTGTTTTTATGGTAC
ATGTACGGCCTTCATTCGCGCCTTGGGGCAGGCGGCAGCGGCGGTGGTGG
TACAGCAGGAACAGGGCGTTGACGCGCAGACAGAGGAAGAACAAGAGGCA
ATTGATGCACAAGAGGCGGCGGCGCTGTCTTTGGCGGAAAGGTACGAGGC
CGCTCAGGGTTTGAAGGAGCGCCAGATGATGGAGGAGGAGCAGGCGGGCA
CGGTGCTGGACCAATACACGCAGATCTATATTCCGGTGAGAGGAGAGAAG
AGGCCAAGAGAGGTGCAGATCACTTCAAACGTGTGCCACGTCAATCGATA
ATACTTATTTTGTGAAGAACGACGGCGTCAGCAGCATCTGCTTCAGCAGC
ATCTGCTTCAGCAGCATCTGCTGCTGCTGCTGCTGCTGATGATGATGATG
ATGATGATAATGATGATGCTGATGCCACGTTAAAGAGTGTATGTTTGTCG
GAACTTCCCGACTTTTGAGGTAGGCTTATTCTTGCATTTGTTATTTTTCG
GATTCAAATAGAGGGAGGTCTCTGTCTCTGTGTGTTGCCGAGTTTGTCAA
AGCATCGGTTCCCTAAATACTCAGTACGAAGCTTGTTTTTTTTTTGCATG
TGATGTGATGACTGGCACTGAGCGGAGTAAGTCGTGGTCATCAGGATATC
TCTACTTTTAGGACAACCTTTAGTGCAACCTTCGCATTGTCATGATCTTC
TTACCATGATAAAACGCCATGCCGTGACGACAATCACACCTCGTATGAAA
CAAATTCGGGACTCCCATGCAGATGGACGGCGTCGTGATCAAGAAGACGT
ACGGGTTTTGGACGTGGCAAGTGTTCGGGTTAATCTTTATCCAGCACTTC
GTGAGGAACATCATCCGAAAGGTGGGTGCGGATGGTCTTTCTCTTTTGTT
TTTTCTTCATTGATCACCGTTTGTTGTACCGCGTTCTGATGTCCGTGTCC
TTCCACTTTCGCATCATGCGGCACGGCGGTAGGGTACGGTACCGTACCGT
ACGGTACAGTTGAGTTTGTTTCGTGGCTGTTGTTTTTTTGTATTTCAGCT
TTCGTTGGTTTGGCTTGGTTCAGCATGCGTGCCCTGTCCCTTGTCAGGAC
CAAAATTCCAACAAGCGCGGTTCGGTTCTACCACATGCATTTATGGTAGC
CCCGTCTCTGGGTCATACTTGGCGCGTGCCGCAATCACCTCGTTACGCCC
TTTGGAGCCTCAACTTTTCTTTCATGTTTCAAATGTCTGACGTCCGTCAC
CGGAGTTCCAAACGATTGCAGCCTATGCTATGCACTTGTTTTGACACATT
CTGTATTTGCAGGGTCTTACCGTAGTTGTTTCAATAACATCAACTCTGTA
GCTGTAGCTCATCCTCGTGTCCCCGGATACTCAAGGGTAGCTGGATTCCA
ACACATCGGTCTTGATTTCTCTCCTGTGTCCCCGATGTCTACGCTACTAC
TGTACGTGTGTGTGCGTGGTTTGATGCAGGGAGGGAGCCTGAAGAAGACG
TCCATGTCGGAGTTGAATTGGGACCACATTGTGACAGAGCCTGAGCACCT
GCTGGAGCTGAAGGCTTACTGCTGCGAGGAGTGCGGGTACACCCTTTTCC
CAGCCAGAGGTAGGATACGCCAGATGGCATGTAGCGTACAGCATTAAACA
TTTTCTTCTTCCACCATCACCGATGGCCGTCCCAGTTAAAATATTATTTG
TTGTTCAATGCAGCGAAGTCCTGAAAATGCCAAGCCATGGCAACCAATAT
CTTTCGCTAACCTCTACCTGACCCCTCTCCCTATCTGTCATCTCTTACCC
TTCTTCTTGTCTTGATTTAGGTCGTCACGAGGTGTTTTTCGATGAGGTCG
AAGACTTCGAGTGTCCAGAGTGCGGGGCACCGCGGTCGGCTTTCTACGAC
GCCAACGACAAGGACGACCCCCACAACACAAAGGTGCCTGCATAGAATGA
ACGGCCGTCACGCATCTGAGTCACGTCGCGGTTCGATTTTTCTTCTCTTT
TGTAGGAAGCCGGGCATGGTGCAAGTATAGTATTTTGGGTGTTTATTTAT
TACAGTTAAGTGGGTCGGCGACTTTGTTTTCACACCCCTCTATCTGTGTG
ACACCATACAGCAGTACTGCACAAAAAAAGAGAAAAAAAAACTGTGACAC
CATACTGCACAAAAAAAAAGAAAAAAAAATATGACACCATACTGCACCGT
GGAGGTTCGAATTATCGAAACAGATCCAGGTGCGAAAGAGAGGCCCTGCT
GTTAGGAGACCCTGCTGTTTTTTCTTTTTTTTGTATCGCGTGCGTGCGTG
CGTACGCGTTGCTACTGCTACTGCCGCTGCCGCTGTGGACTGCTTATTCT
ATGTTCGCTCCTGTTTTGTTTCACCAACGGAACCATGACCTTACCTTTTT
TTTCATTTGACCTTCTGGGCGGTTTTGTTGTTGTCGTGCGTATTTCCAGC
GCAACGAAGAAGCAGAAGCCAAGGCGGGAGCTGATGGGAAGGGGGGGGGC
GCTGATGACGACAACGCCGGGGGTGTTGTGGCGTCGGCGGCAGCGGGGGC
ATCATCGAGTGTCGCAGATGCGAAGGTAGGTGCATACGTGTGCGAAAACG
AACCCAAGTGGTATTTGATGCGCTGCTGGCACTGGTCGTCGGGAGAGGGG
CAATCGTTAGTGTTTGGCTTTGTTGTAGCCACGCTGCAGTTGGAATCATC
TTGTTTTTTGTCTTCCTTGGCTGGAGTGCCCTGCTCGGCGGAAACGGCAG
CGAGCCACAACTTCTTCTTCTTCTTCTTGGTCGCTTTTTGTACAAGCTTT
GGCGCTCTTGAGTTGCCGTTTGAGGACATTCCGGAGGGTTACGGCTAAAA
TATCGCTTACGGTGGTACTTCCTCTGTCCCATAAGTAAAGGTCTTATAAT
CACACAGACCGTTATAACGGTGTGCGATGCCGCAGGCGTTGATTTTTTTG
AAATCCTATTCTTTGGTGTTTTTTTAGTTGGAACCCGTTTTTTTTTTTGC
ACGCACCACCCTGGGTGCATGAACGGCCGAGAAAAAGGAGTCGGCCCAAA
AAAGGCCGTATTTCGCCCCTTTTAGGGAAAGCTGAAGAGACTTCGAAACA
GCGGGAAAATGGCCGAAATCGTAAAAAAAAAAACGAAAAATGGCTCTTTT
TATCCGATTCATCATCGGTGTACGTCACCTACGTCCCGTCGACAATCACT
TGGGTACATAGCAACCTTTGTTCGTTTCAAAACAGGAAAATTTCGACGAA
TTTACGCCGAAAATGGTACGAACTGGTCGAACTTGGTCGAAAATGCGTCA
TTTTCGACCCTCTAATTTTCAGTAAGTTCGACCCGAGATTTTTTTTTTTC
GCATCAGCATCACCGCATCCCTAGCTTTTCCCCAAACCTAACCATAGCGT
CGTAGGCAACTCCGTTGATGAGATATGATTTATGCCCCACAAGGGCCTTT
ACTTAAGGGACTTAAGGGACGGAGGAAGTATTACTTCCAATCCACGCTCT
GGTTCCAACATCGTTTTGGTGCCCATGCCTCGACCCTGCGATCGATTCGC
CTCAACTCTTGTCGCCTCGTCTTGTCTTGTATTTTCTTGACTTGTTGCGT
GCAGTCGCCGAGCGCTATGACGACAACAGCGCCCGTATCACCATCAGCAC
CAGCAAGCAGCACGCCGGAATCTAAAGCAGCACCGCCAGAAGCTAAAACA
GGAGAAACTAGCCCTCCTCCAGACAACACGAGGCCAGATGGCGATGACGA
TGGCGACGATCTCCTTGATTTATAGACTAACTCACGTATCGTAACTGCTG
TAACGGTGCTGGTGTCGTTGTTTGTTTGGATATTTCTTGTGGTGGGTGCC
GTCACGTCTGTCCAGTTTTCGCTGATGGAAGGTGTATGGCCAGCTTGATG
CACTGTTGGGAGTCTTGTCTCGTCGAAGGCAATCGTACTGTCTGTGTCGT
GTCTTTTCGAACTCAACAACGCAACAACGTGTTTTTTGTTTTTTGCTTTT
TTCATCCTTTTGGATGCGATGGGCAGACTACTGCTGTTCAACTTGGAGCT
TCCCCACGAACATGACAAGAGTGAAGTTTGCAAGTTGGTCGCGATCGTTG
TCTCAGGCGCCGACCTGTTGACCTGAGTGGATGTGTGGATGCGTCCACGC
AGCACGGCTCACTCACCCCCCTCTTTAAGACTTGAGACAGACACGCAACT
CCGAGTGCGGGGTCGAGGGGGGCAAGAAAGCTTCGGATGGTCGCAATTGA
GGTTTTCCCCCTACAAGGCCCGCACTATTAATTATTTCCAGGAGGCAACG
A
back to top

Coding sequence (CDS) from alignment at C-linearis_contig90:576532..583632+

>mRNA_C-linearis_contig90.16785.1 ID=mRNA_C-linearis_contig90.16785.1|Name=mRNA_C-linearis_contig90.16785.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2436bp|location=Sequence derived from alignment at C-linearis_contig90:576532..583632+ (Chordaria linearis ClinC8C monoicous)
ATGCTACGTCTTGTGATCCCGCTCGCTCTAGCCGTAGGAACCGGCACTCA
GCCGACCCACGCGTTCGTGGTTGCCCCGCACCGACTGGTGCTCCCGCCAT
GCGCGCGAAGTTGCAGCTCTGTCACAGATGCTACGTCTTGTGATCCCGCT
CGCTCTAGCCGTAGGAACCGGCACTCAGCCGACCCACGCGTTCGTGGTTG
CCCCGCACCGACTGGTGCTCCCGCCATGCGCGCGAAGTTGCAGCTCTGTC
ACAGGCCGACAAGCAGTGCCCCTCAGCGATCGAGACGGCTCGGGCTCGGC
TTGGAGCCACGGGAGGGAAAGGAGAGACAGAAGCAGCAATGCGAACGTTA
ATGGTAACGCTAATGGTGGCCTTTCTATGCGCGCCGGGAGACCTGGCAGG
GAGCGCCGTGTGATGATCGAGGGGGCGGGGGGGGAGACACGACGGGTGGA
ACGGCGTTCGAGAAAGCCGGACTTGAAGTCAATGCGGAGGATTGGCCTGC
AGGCCGACAAGCAGTGCCCCTCAGCGATCGAGACGGCTCGGGCTCGGCTT
GGAGCCACGGGAGGGAAAGGAGAGACAGAAGCAGCAATGCGAACGTTAAT
GGTAACGCTAATGGTGGCCTTTCTATGCGCGCCGGGAGACCTGGCAGGGA
GCGCCGTGTGATGATCGAGGGGGCGGGGGGGGAGACACGACGGGTGGAAC
GGCGTTCGAGAAAGCCGGACTTGAAGTCAATGCGGAGGATTGGCCTGCAG
GCGGCAGCGGCGGTGGTGGTACAGCAGGAACAGGGCGTTGACGCGCAGAC
AGAGGAAGAACAAGAGGCAATTGATGCACAAGAGGCGGCGGCGCTGTCTT
TGGCGGAAAGGTACGAGGCCGCTCAGGGTTTGAAGGAGCGCCAGATGATG
GAGGAGGAGCAGGCGGGCACGGTGCTGGACCAATACACGCAGATCTATAT
TCCGGCGGCAGCGGCGGTGGTGGTACAGCAGGAACAGGGCGTTGACGCGC
AGACAGAGGAAGAACAAGAGGCAATTGATGCACAAGAGGCGGCGGCGCTG
TCTTTGGCGGAAAGGTACGAGGCCGCTCAGGGTTTGAAGGAGCGCCAGAT
GATGGAGGAGGAGCAGGCGGGCACGGTGCTGGACCAATACACGCAGATCT
ATATTCCGATGGACGGCGTCGTGATCAAGAAGACGTACGGGTTTTGGACG
TGGCAAGTGTTCGGGTTAATCTTTATCCAGCACTTCGTGAGGAACATCAT
CCGAAAGATGGACGGCGTCGTGATCAAGAAGACGTACGGGTTTTGGACGT
GGCAAGTGTTCGGGTTAATCTTTATCCAGCACTTCGTGAGGAACATCATC
CGAAAGGGAGGGAGCCTGAAGAAGACGTCCATGTCGGAGTTGAATTGGGA
CCACATTGTGACAGAGCCTGAGCACCTGCTGGAGCTGAAGGCTTACTGCT
GCGAGGAGTGCGGGTACACCCTTTTCCCAGCCAGAGGGAGGGAGCCTGAA
GAAGACGTCCATGTCGGAGTTGAATTGGGACCACATTGTGACAGAGCCTG
AGCACCTGCTGGAGCTGAAGGCTTACTGCTGCGAGGAGTGCGGGTACACC
CTTTTCCCAGCCAGAGGTCGTCACGAGGTGTTTTTCGATGAGGTCGAAGA
CTTCGAGTGTCCAGAGTGCGGGGCACCGCGGTCGGCTTTCTACGACGCCA
ACGACAAGGACGACCCCCACAACACAAAGGTCGTCACGAGGTGTTTTTCG
ATGAGGTCGAAGACTTCGAGTGTCCAGAGTGCGGGGCACCGCGGTCGGCT
TTCTACGACGCCAACGACAAGGACGACCCCCACAACACAAAGCGCAACGA
AGAAGCAGAAGCCAAGGCGGGAGCTGATGGGAAGGGGGGGGGCGCTGATG
ACGACAACGCCGGGGGTGTTGTGGCGTCGGCGGCAGCGGGGGCATCATCG
AGTGTCGCAGATGCGAAGCGCAACGAAGAAGCAGAAGCCAAGGCGGGAGC
TGATGGGAAGGGGGGGGGCGCTGATGACGACAACGCCGGGGGTGTTGTGG
CGTCGGCGGCAGCGGGGGCATCATCGAGTGTCGCAGATGCGAAGTCGCCG
AGCGCTATGACGACAACAGCGCCCGTATCACCATCAGCACCAGCAAGCAG
CACGCCGGAATCTAAAGCAGCACCGCCAGAAGCTAAAACAGGAGAAACTA
GCCCTCCTCCAGACAACACGAGGCCAGATGGCGATGACGATGGCGACGAT
CTCCTTGATTTATAGTCGCCGAGCGCTATGACGACAACAGCGCCCGTATC
ACCATCAGCACCAGCAAGCAGCACGCCGGAATCTAAAGCAGCACCGCCAG
AAGCTAAAACAGGAGAAACTAGCCCTCCTCCAGACAACACGAGGCCAGAT
GGCGATGACGATGGCGACGATCTCCTTGATTTATAG
back to top