prot_C-linearis_contig9.16709.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16709.1
Unique Nameprot_C-linearis_contig9.16709.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length278
Homology
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BLAST of mRNA_C-linearis_contig9.16709.1 vs. uniprot
Match: A0A6H5JSR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.810e-22
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 0 
Query:   44 AEELRTATDPAAPTRI-TGKVTEYNFANMPRNPRSSVWTGQGGPIWFIHLEDAAVIMGGRSFPLAGITQLGVRHRILPAPPAPRAP 128
            ++ELR     + PT + TG+VTEYNFA+MPRNP SSVWTGQGGP WFI L+DAAV +G +  PL+G TQLGVRHRI+P P A  AP
Sbjct:  325 SKELRRPKSFSVPTPVLTGRVTEYNFADMPRNPTSSVWTGQGGPTWFIQLKDAAVRIGAKVHPLSGSTQLGVRHRIVP-PSAEAAP 409
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSR4_9PHAE1.810e-2263.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3216231..3218171 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16709.1mRNA_C-linearis_contig9.16709.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3216231..3218179 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16709.1 ID=prot_C-linearis_contig9.16709.1|Name=mRNA_C-linearis_contig9.16709.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=278bp
MDAIYHRTHLGDALLHALQKLCVEGELEGAEARMILADFNEVMAEELRTA
TDPAAPTRITGKVTEYNFANMPRNPRSSVWTGQGGPIWFIHLEDAAVIMG
GRSFPLAGITQLGVRHRILPAPPAPRAPAKTEGHAGGGNRKGASNRCGSF
PAKEEAGSTVRKKSREEEKQAASCERGRGGKASGTKSLHRGDNKDRKKEE
EVEATGRNKLGKRKRPATSEAARRHQQQQEVGGRASSEGKKAARKANGPI
VAMASTTLPRHSTTPTKTTISTTSWRT*
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