mRNA_C-linearis_contig9.16709.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig9.16709.1
Unique Name	mRNA_C-linearis_contig9.16709.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig9.16709.1 vs. uniprot
Match: A0A6H5JSR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.910e-22
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 3

Query:  138 AEELRTATDPAAPTRI-TGKVTEYNFANMPRNPRSSVWTGQGGPIWFIHLEDAAVIMGGRSFPLAGITQLGVRHRILPAPPAPRAP 392
            ++ELR     + PT + TG+VTEYNFA+MPRNP SSVWTGQGGP WFI L+DAAV +G +  PL+G TQLGVRHRI+P P A  AP
Sbjct:  325 SKELRRPKSFSVPTPVLTGRVTEYNFADMPRNPTSSVWTGQGGPTWFIQLKDAAVRIGAKVHPLSGSTQLGVRHRIVP-PSAEAAP 409

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig9.16709.1 vs. uniprot

BLAST of mRNA_C-linearis_contig9.16709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JSR4_9PHAE	1.910e-22	63.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig9	contig	C-linearis_contig9:3216231..3218179 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	842
Cds size	834
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig9.16709.1	prot_C-linearis_contig9.16709.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig9 3216231..3218171 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930704.386485-CDS-C-linearis_contig9:3216230..3216319	1622930704.386485-CDS-C-linearis_contig9:3216230..3216319	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3216231..3216319 -
1690881206.1449234-CDS-C-linearis_contig9:3216230..3216319	1690881206.1449234-CDS-C-linearis_contig9:3216230..3216319	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3216231..3216319 -
1622930704.4030952-CDS-C-linearis_contig9:3216425..3216990	1622930704.4030952-CDS-C-linearis_contig9:3216425..3216990	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3216426..3216990 -
1690881206.154801-CDS-C-linearis_contig9:3216425..3216990	1690881206.154801-CDS-C-linearis_contig9:3216425..3216990	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3216426..3216990 -
1622930704.415164-CDS-C-linearis_contig9:3217558..3217615	1622930704.415164-CDS-C-linearis_contig9:3217558..3217615	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3217559..3217615 -
1690881206.1736577-CDS-C-linearis_contig9:3217558..3217615	1690881206.1736577-CDS-C-linearis_contig9:3217558..3217615	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3217559..3217615 -
1622930704.4272614-CDS-C-linearis_contig9:3218048..3218171	1622930704.4272614-CDS-C-linearis_contig9:3218048..3218171	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3218049..3218171 -
1690881206.1849694-CDS-C-linearis_contig9:3218048..3218171	1690881206.1849694-CDS-C-linearis_contig9:3218048..3218171	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig9 3218049..3218171 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930704.4414632-UTR-C-linearis_contig9:3218171..3218179	1622930704.4414632-UTR-C-linearis_contig9:3218171..3218179	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig9 3218172..3218179 -
1690881206.1958995-UTR-C-linearis_contig9:3218171..3218179	1690881206.1958995-UTR-C-linearis_contig9:3218171..3218179	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig9 3218172..3218179 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig9:3216231..3218179-
coding sequence from alignment at C-linearis_contig9:3216231..3218179-

protein sequence of mRNA_C-linearis_contig9.16709.1

>prot_C-linearis_contig9.16709.1 ID=prot_C-linearis_contig9.16709.1|Name=mRNA_C-linearis_contig9.16709.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=278bp
MDAIYHRTHLGDALLHALQKLCVEGELEGAEARMILADFNEVMAEELRTA
TDPAAPTRITGKVTEYNFANMPRNPRSSVWTGQGGPIWFIHLEDAAVIMG
GRSFPLAGITQLGVRHRILPAPPAPRAPAKTEGHAGGGNRKGASNRCGSF
PAKEEAGSTVRKKSREEEKQAASCERGRGGKASGTKSLHRGDNKDRKKEE
EVEATGRNKLGKRKRPATSEAARRHQQQQEVGGRASSEGKKAARKANGPI
VAMASTTLPRHSTTPTKTTISTTSWRT*

mRNA from alignment at C-linearis_contig9:3216231..3218179-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig9.16709.1 ID=mRNA_C-linearis_contig9.16709.1|Name=mRNA_C-linearis_contig9.16709.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1949bp|location=Sequence derived from alignment at C-linearis_contig9:3216231..3218179- (Chordaria linearis ClinC8C monoicous)
ATCCGCCCATGGACGCTATATACCACAGGACCCATCTTGGCGATGCGCTG
CTCCACGCCTTGCAGAAACTTTGCGTCGAAGGAGAGCTGGAGGGCGCCGA
GGCGCGGATGATTCTCGCCGACTTCAATGAGGTAAAAGAGAGGATACTCT
GTACGAGCCGAACCCTACTTTATGACCTGGACGGCGCTTGGGAGGAACAT
CATTAGCAATGGTTAGAGTGTAGCGTGTGCTGTATCCACGCGGATGGAGA
CGTCGCTGCTTCCCAAGGGTGCAAGGCACCCGATGAAATACTCCAAGCTC
TTGAGAGCTACCAAGCTGTGTCGAACCGGGGTTTCAAAATTTGAATAGTC
TGTTTGTTGCATATCATACCACCGCAACCCATTCTTGAGGATCGCGACAC
ACAGCTGGAGACAAGAGCTTATTACTCAGCTTTCCGCGTAAAAGTCTTTT
AAAACTCGGTCTTCCTCATGTCTTTGGTTCCCCTGGCCGTTTCTTTTCTT
GTGGATGGGTCGTGTTGATTTTTGTCCCACCGCACCCTGCCTGCATCGGT
CGACACTCATGTAGGTCATGGCGGAGGAGCTGCGAACCGCGACCGACCCC
GCCGCGCCAACGCGAATCACGGTGGGTGAAGCACCCAAAAATTGGGGAGC
AAACCTCGTCGGTTTGAGGGAGCAACGTGTACAACAGGCTAGAGTTGGGT
CCTTCCTGCAGGGAGGGTTTTGTGGCAAGATTTTCGTGATTGCGTACTTT
GTGCCGCTTTTTAGTTGGTAAGGGCTTGCTTGTCACGCGTTGGTGGGCGC
CTCAGCTAGAGATGGCTTCACACTCGGAGAGCGAGGCCAATCTTTTGTCT
CCTTGGATTTTTCGAGGTGGCGGCGCTGCTGCTGCAATTGTTGTCACGAC
TGGGTACAACAGGTAAGGGCGAGGTGCACACATGTTTGCTAGGTTCGAAT
GGGTAGACGAAACCGGTACCTCGGCCGCAGCACAGCCCGCACACCACACG
CACCAGCCGGGAGAACCAAGCGGGTTTGACCCTACAAAAGCTGCTTCAAA
AGTGCTCCGACCCGCCCATGATCCCGCTCTCACTAGATGCCGCGCTGTAC
CCCGTTGTTGGTTTTTCCTGCCCTCCTCCACCGTCGCTCCCCAACCCCCC
GTGGGATCCGACCGACGCTCACTCCTGCTGAACAACCAGGGCAAAGTGAC
CGAATATAACTTCGCTAACATGCCGCGTAATCCGAGGAGCTCGGTGTGGA
CGGGGCAAGGAGGGCCGATTTGGTTCATCCATCTCGAGGACGCCGCCGTG
ATCATGGGCGGCCGGTCCTTCCCCCTGGCGGGGATCACCCAGCTTGGCGT
CCGACACCGCATCTTGCCGGCTCCACCGGCACCGCGGGCGCCGGCGAAAA
CGGAGGGGCACGCAGGGGGGGGGAATAGGAAAGGGGCATCCAACCGTTGC
GGGAGCTTTCCGGCAAAGGAAGAGGCAGGGTCTACCGTAAGGAAGAAATC
GAGAGAGGAGGAGAAGCAGGCGGCGAGCTGTGAACGGGGTCGTGGTGGGA
AAGCTAGCGGAACCAAGAGCTTGCATCGGGGAGACAACAAAGATCGGAAG
AAAGAGGAAGAGGTGGAGGCGACGGGCAGGAACAAGCTAGGAAAGAGAAA
GCGCCCGGCGACGTCAGAGGCTGCCAGGCGGCACCAACAACAGCAGGAGG
TTGGTGGAAGGGCGTCGAGCGAGGGCAAGAAGGCAGCGAGAAAGGCCAAC
GGCCGTTCGGACCACGATAGCGAGAGAGACAGCAGCAGCAGCAGTAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTCATCAT
CGTCATCGAGCGATAGTGGCGATGGCCTCGACGACTTTACCAAGGCACTC
GACGACACCGACGAAGACAACGATCTCGACGACCTCTTGGAGGACTTAG

Coding sequence (CDS) from alignment at C-linearis_contig9:3216231..3218179-

>mRNA_C-linearis_contig9.16709.1 ID=mRNA_C-linearis_contig9.16709.1|Name=mRNA_C-linearis_contig9.16709.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at C-linearis_contig9:3216231..3218179- (Chordaria linearis ClinC8C monoicous)
ATGGACGCTATATACCACAGGACCCATCTTGGCGATGCGCTGCTCCACGC
CTTGCAGAAACTTTGCGTCGAAGGAGAGCTGGAGGGCGCCGAGGCGCGGA
TGATTCTCGCCGACTTCAATGAGATGGACGCTATATACCACAGGACCCAT
CTTGGCGATGCGCTGCTCCACGCCTTGCAGAAACTTTGCGTCGAAGGAGA
GCTGGAGGGCGCCGAGGCGCGGATGATTCTCGCCGACTTCAATGAGGTCA
TGGCGGAGGAGCTGCGAACCGCGACCGACCCCGCCGCGCCAACGCGAATC
ACGGTCATGGCGGAGGAGCTGCGAACCGCGACCGACCCCGCCGCGCCAAC
GCGAATCACGGGCAAAGTGACCGAATATAACTTCGCTAACATGCCGCGTA
ATCCGAGGAGCTCGGTGTGGACGGGGCAAGGAGGGCCGATTTGGTTCATC
CATCTCGAGGACGCCGCCGTGATCATGGGCGGCCGGTCCTTCCCCCTGGC
GGGGATCACCCAGCTTGGCGTCCGACACCGCATCTTGCCGGCTCCACCGG
CACCGCGGGCGCCGGCGAAAACGGAGGGGCACGCAGGGGGGGGGAATAGG
AAAGGGGCATCCAACCGTTGCGGGAGCTTTCCGGCAAAGGAAGAGGCAGG
GTCTACCGTAAGGAAGAAATCGAGAGAGGAGGAGAAGCAGGCGGCGAGCT
GTGAACGGGGTCGTGGTGGGAAAGCTAGCGGAACCAAGAGCTTGCATCGG
GGAGACAACAAAGATCGGAAGAAAGAGGAAGAGGTGGAGGCGACGGGCAG
GAACAAGCTAGGAAAGAGAAAGCGCCCGGCGACGTCAGAGGCTGCCAGGC
GGCACCAACAACAGCAGGAGGTTGGTGGAAGGGCGTCGAGCGAGGGCAAG
AAGGCAGCGAGAAAGGCCAACGGCCGGCAAAGTGACCGAATATAACTTCG
CTAACATGCCGCGTAATCCGAGGAGCTCGGTGTGGACGGGGCAAGGAGGG
CCGATTTGGTTCATCCATCTCGAGGACGCCGCCGTGATCATGGGCGGCCG
GTCCTTCCCCCTGGCGGGGATCACCCAGCTTGGCGTCCGACACCGCATCT
TGCCGGCTCCACCGGCACCGCGGGCGCCGGCGAAAACGGAGGGGCACGCA
GGGGGGGGGAATAGGAAAGGGGCATCCAACCGTTGCGGGAGCTTTCCGGC
AAAGGAAGAGGCAGGGTCTACCGTAAGGAAGAAATCGAGAGAGGAGGAGA
AGCAGGCGGCGAGCTGTGAACGGGGTCGTGGTGGGAAAGCTAGCGGAACC
AAGAGCTTGCATCGGGGAGACAACAAAGATCGGAAGAAAGAGGAAGAGGT
GGAGGCGACGGGCAGGAACAAGCTAGGAAAGAGAAAGCGCCCGGCGACGT
CAGAGGCTGCCAGGCGGCACCAACAACAGCAGGAGGTTGGTGGAAGGGCG
TCGAGCGAGGGCAAGAAGGCAGCGAGAAAGGCCAACGGCCCGATAGTGGC
GATGGCCTCGACGACTTTACCAAGGCACTCGACGACACCGACGAAGACAA
CGATCTCGACGACCTCTTGGAGGACTTAGCGATAGTGGCGATGGCCTCGA
CGACTTTACCAAGGCACTCGACGACACCGACGAAGACAACGATCTCGACG
ACCTCTTGGAGGACTTAG