mRNA_C-linearis_contig8.15807.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15807.1 vs. uniprot
Match: A0A836CEG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG6_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.440e-30 Identity = 146/512 (28.52%), Postives = 219/512 (42.77%), Query Frame = 1
Query: 130 APMINAGFRAVLNEASRLGALDPPHGRTPMPDPKKITEEDAFASSSAGDNDNSDREETGTDVSEEPTAASSADLREGEXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGEYLRKNNPAAVRAREEQRNADLEYLRHRAARCLAREAAVVELRDLVVHRQSGITHGPIVGEVSDCGGVVWATAFRSGQCTIELSRHEDF--RSICRQGVVKVDQSTELSAIVEFDDLDSSTTWYHRSYLHNPRKGFDGPAAGFCVKGKFSTLPERDEDSCGTFRLAVFSLHGLGLRS-ATAKHRSAIEKACSAVSAAKPRCCLVLGG----------PSRYQGVCLSTSNSIMRFYPGSFSDLQETAARIPVLSRLLQGNGILTASGLISKTVKRQKGKHHHSSAKLSKHGNSTRAEGTATAGGAKKTPNAKRSSTRAEGESLVGXGEEKRSSPPPDWPIRCPEAWGSR-PLGPTAEVFIIDARAGFLGEDQLSWVTEAVEESRRTWKVIACGVSVGFPVGP 1623
A +++ G RA+L EA RL + PP+GR+ +PDP+K+ E PT X XXXXXXXX L+ YK++YGFNPLV+LGE+L + +P ++A +E + + + A+ R+ A +LRDL R+SG+ GP+VG + GGV+WA R+G ++L + F I V VD +E SA + L T +++R + P GF G G +G F TLP R A L +G S A H A+ + + A++P CL LG P ++G T R S+ + P L +L++ G LTA S L H S A A G+ T + +T +L + WP+ + S L P E+++++ RAG L + +A+ S TWK++A G S+ P GP
Sbjct: 694 ATLLDEGIRALLAEAQRLDVVQPPYGRSVIPDPRKVLE---------------------------PTPEXXXXXV---XLQVTXXXXXXXXNALMAYKYEYGFNPLVYLGEWLLQRDPVRLQAEKEAQEREQQKEELAKAQSAVRKEAFAQLRDLTARRRSGVVAGPVVGAIDAQGGVLWAKTLRTGTLQLQLCADDGFAPEHILLTDTVDVDIMSECSARIPLGGLAPETPYHYRVCVDKPSHGFYGIDGGCFTQGTFRTLPAPSN------RAARSELTFMGFSSDALVDH--AMSGVFAGMLASEPNFCLFLGDMTAGTALSSRPGGFRGKLPPTEGREDRVR--SYRAFHAMIEQCPPLRQLVRSVGFLTA---------------WDDSRALHAHTGSNDGSSKAGAAGSCGTGGVSQDATVDTMAALQLVADY--------WPVHGKGSGFSMVTLSPGVELYVLETRAGTLPNASAQQLKKAILASTATWKLVAVGTSLSAPPGP 1142
BLAST of mRNA_C-linearis_contig8.15807.1 vs. uniprot
Match: A0A7S3XL53_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL53_HETAK) HSP 1 Score: 97.4 bits (241), Expect = 1.100e-19 Identity = 64/200 (32.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query: 160 VLNEASRLGALDPPHGRTPMPDPKKITEEDAFASSSAGDNDNSDREETGTDVSEEPTAASSADLREGEXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGEYLRKNNPAAVRAREEQRNADLEYLRHRAARCLAREAAVVELRDLVVHRQSGITHGPIVGEVSDCGGVVWATAFRSGQCTIELSRHEDFRSICRQGVVKV 759
+L + L LDPP+GR P K EE+ + SS+ +E G S+E S+ DL + ++K+DYGFNPLV+LG YL+KNNP + +++++ L YL+ RA L ++ ++L++ +V +SGI GP+ G + V WA + G +++S +EDFR + VV+V
Sbjct: 3 LLKKVIELDILDPPYGR---PHVAKFKEEEDESDSSS--------DEDGETSSDE----STVDLEDP------------------KFKYDYGFNPLVYLGTYLKKNNPIFISQKQKEKENSLAYLQKRADHALRQQEIALQLQEQMVRLRSGIQQGPVCGGATADSIVFWAKTTKPGNLVVQVSDYEDFRYVTETAVVEV 169
BLAST of mRNA_C-linearis_contig8.15807.1 vs. uniprot
Match: A0A7S2MF24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF24_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 6.460e-18 Identity = 56/172 (32.56%), Postives = 89/172 (51.74%), Query Frame = 1
Query: 415 EYKFDYGFNPLVFLGEYLRKNNPAAVRAREEQRNADLEYLRHRAARCLAREAAVVELRDLVVHRQSGITHGPIVGEVSDCGGVVWATAFRSGQCTIELSRHEDFRSICRQGVVKVDQSTELSAIVEFDDLDSSTTWYHRSYLHNPRKGFDGPA-AGFCVKGKFSTLPERDED 927
++ +++GFNP+V LG YLR NNP + R Q+ + YL+ R L E + V SGIT GP+ G VS +WA + GQ E+S EDF ++ + V+VD L+ V+ L ++ Y+R+YL N + G ++GK +TLP+ +++
Sbjct: 8 KFIYEFGFNPVVQLGNYLRINNPVFIEKRRNQKAEAVAYLQKRGQAALKIETTFQSILARVKTMCSGITLGPVCGSVSYDSVKLWAASKSPGQIIFEISYQEDFAALSDRVGVEVDDEIGLTGCVQIGHLHPASVVYYRAYLENDKGSTPIRLDRGEFIRGKVTTLPDPEDE 179
BLAST of mRNA_C-linearis_contig8.15807.1 vs. uniprot
Match: A0A7S3GMX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMX5_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.580e-9 Identity = 57/223 (25.56%), Postives = 99/223 (44.39%), Query Frame = 1
Query: 136 MINAGFRAVLNEASRLGALDPPHGRTPMPDPKKITEEDAFASSSAGDNDNSDREETGTDVSEEPTAASSADLREGEXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGEYLRKNNPAAVRAREEQRNADLEYLRHRAARCLAREAAVVELRDLVVHRQSGITHGPIVGEVSDCGGVVWATAFRSGQCTIELSRHEDFRSICRQGVVKVDQSTELSAIVEFDDL 804
+++ G +L EA + LDPP+GR P P + ED F A +D DV EP E+KF+YGF+PL FL +++ ++P +V R +++ A ++L+ RA + + +L L + SGI GPI+ S +V + G+ ++S+ DF+ + ++ V VD + S + +D+
Sbjct: 14 IVHDGIAKLLAEAKKKDCLDPPYGREAFPTP--LITEDQFIQDGALQSD---------DV--EP-----------------------------EFKFEYGFDPLKFLSDFIVWSHPNSVEDRRQKKIAAAKFLQLRADHARLQLSISRDLSQLANDQSSGILWGPIITPTSSTSVMVSCKPIKLGKVIFQISKFRDFKEVLQREEVFVDSLNDESEVATLEDI 194 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15807.1 >prot_C-linearis_contig8.15807.1 ID=prot_C-linearis_contig8.15807.1|Name=mRNA_C-linearis_contig8.15807.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=816bp MSTAVLEGGSSQTIIGSDNISSKSSGKKGNTTTSSTALDLASIAPMINAGback to top mRNA from alignment at C-linearis_contig8:3598354..3604525- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15807.1 ID=mRNA_C-linearis_contig8.15807.1|Name=mRNA_C-linearis_contig8.15807.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6172bp|location=Sequence derived from alignment at C-linearis_contig8:3598354..3604525- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:3598354..3604525- >mRNA_C-linearis_contig8.15807.1 ID=mRNA_C-linearis_contig8.15807.1|Name=mRNA_C-linearis_contig8.15807.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4896bp|location=Sequence derived from alignment at C-linearis_contig8:3598354..3604525- (Chordaria linearis ClinC8C monoicous)back to top |