mRNA_C-linearis_contig8.15645.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: D8LI88_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI88_ECTSI) HSP 1 Score: 493 bits (1269), Expect = 1.670e-171 Identity = 264/374 (70.59%), Postives = 292/374 (78.07%), Query Frame = 3
Query: 90 MISHLVKGCLCLRLLPSAXXXXXXXXXXXXXXXXXXXXXXXRPVAFGWTGGEGSRSATTRTQAVAAHQ---------QNHDLRELKDVPASTLATIEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAPTNAEDGSAIVMEQLLRSKRAGLGEE 1184
MIS +VKG +CLRLLPS+ RP +FGWT N + R+L D PAS LAT+EAVASDVDGTLTTP+VTVT RTK+AIKAV++S L FFPATGKTRTGMYKILGED++AHLK K+TPGVF QGLVVYSG+GDEVL+E+LLDVEIVSQVASFCEE GVSLIAYSGD+IVCS KDAETDKIALY EPMP AVGPL +AMAAGLRVHKLILMD+KEAIDRVRP +ERLIG+RATFTQALPDMLEVLP GASKG GV++LL HLGIDP RLMALGDAENDVEMLRLAGVG+CVGNASP A+AAARF+APTNA DGSA+ MEQLLRSK GEE
Sbjct: 1 MISQVVKGFVCLRLLPSSGAVSSTAVRGVQRGTYYHHRLHHRPASFGWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNREPRQLADAPASLLATVEAVASDVDGTLTTPEVTVTPRTKDAIKAVLNSELAFFPATGKTRTGMYKILGEDIAAHLKTKDTPGVFIQGLVVYSGAGDEVLYERLLDVEIVSQVASFCEERGVSLIAYSGDEIVCSVKDAETDKIALYSEPMPSAVGPLTDAMAAGLRVHKLILMDSKEAIDRVRPDIERLIGDRATFTQALPDMLEVLPAGASKGHGVDVLLKHLGIDPVRLMALGDAENDVEMLRLAGVGVCVGNASPPARAAARFMAPTNANDGSAVAMEQLLRSKEPPAGEE 374
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A6H5KW38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW38_9PHAE) HSP 1 Score: 397 bits (1021), Expect = 1.170e-135 Identity = 201/241 (83.40%), Postives = 219/241 (90.87%), Query Frame = 3
Query: 462 PATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAPTNAEDGSAIVMEQLLRSKRAGLGEE 1184
P +TRTGMYKILGED++AHLKAK+TPGVF QGLVVYSG+GDEVL+E+LLD+EIVSQVASFCEE GVSLIAYSGD+IVCS KDAETDKIALY EPMP AVGPL +AMAAGLRVHKLILMD+KEAIDRVRP +ERLIG+RATFTQALPDMLEVLP GASKG GV +LL HLGIDP RLMALGDAENDVEMLRLAGVG+CVGNASP A+AAARF+APTNA DGSA+ MEQLLRSK GEE
Sbjct: 16 PRARQTRTGMYKILGEDIAAHLKAKDTPGVFIQGLVVYSGAGDEVLYERLLDIEIVSQVASFCEERGVSLIAYSGDEIVCSEKDAETDKIALYSEPMPSAVGPLTDAMAAGLRVHKLILMDSKEAIDRVRPDIERLIGDRATFTQALPDMLEVLPAGASKGHGVNVLLKHLGIDPVRLMALGDAENDVEMLRLAGVGVCVGNASPPARAAARFMAPTNANDGSAVAMEQLLRSKEPPAGEE 256
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A836C834_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C834_9STRA) HSP 1 Score: 287 bits (735), Expect = 4.050e-91 Identity = 160/309 (51.78%), Postives = 210/309 (67.96%), Query Frame = 3
Query: 246 GSRSATTRTQAVA---AHQQNHDLRELKDVPASTLATIEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYS-GSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSA-KDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAPTNAEDGSAIVMEQLLR 1157
G +++ TR QA A A + + EL ++L I+AVASD+DGT T PD+ V R +AI A +DSG+VFFPATGK+R GM LG LKA+ PGV+ QGLVVY G +V++E+LL +I +VA FC + +SLIAYSGD IVC+ +D IA Y+EP P AVG + EAMAAGL VHKLI+M E + + RP + +L+G+RA+ QA+P MLEVLP GASKG GV LLAH+G LMA+GDAEND+EML++A V + +GNA P K ARFVAPTNA++G+A+ +E LL+
Sbjct: 30 GQKASGTRRQAAASSTAAELQKPVVELSQETLASLPEIKAVASDIDGTCTAPDLQVPQRVMDAIVATLDSGIVFFPATGKSRAGMMNTLGP-AGDILKARGAPGVYIQGLVVYGPGPDSKVIYERLLGADIGREVAQFCRDRNMSLIAYSGDRIVCTRLEDKYVTTIADYHEPFPEAVGEIDEAMAAGLPVHKLIIMAPAEEVVQQRPALAQLLGQRASLVQAMPHMLEVLPLGASKGIGVAKLLAHMGFKVENLMAMGDAENDIEMLKMAAVSVAMGNADPEVKKVARFVAPTNAQEGAAVALETLLQ 337
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A7S3XQN8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQN8_HETAK) HSP 1 Score: 241 bits (614), Expect = 3.610e-73 Identity = 134/250 (53.60%), Postives = 168/250 (67.20%), Query Frame = 3
Query: 348 IEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVH-KLILMDTKE-AIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAA 1091
I A+ASD+DGTL V+ R E I+ G++FFPATGK+R G+Y LGE LK +N PGVF QGL+VY +G+ V+ E LL +E V +V FC G+SL+AY D I+CS +DA TDK+ Y EP P A+GPL EAM A +V+ KLI+M E I ++RP +E LIGE A TQA+ MLE+LP G SKG GV LL LG+DP L+ALGDAENDVEMLRLAG G+ +GNA P+ AA
Sbjct: 37 ITAIASDIDGTLLNSKQQVSQRNVETIQRARKKGILFFPATGKSRQGVYNALGE-FGQELKKENCPGVFLQGLIVYDQNGN-VIHEMLLPLEPVKKVVQFCTREGISLVAYHRDRILCSQRDANTDKLINYCEPTPEAIGPLDEAMVANGQVYNKLIIMGNDEDQITKIRPAMEALIGEDAEITQAIGYMLEILPKGGSKGDGVRRLLGALGVDPAGLLALGDAENDVEMLRLAGTGVAMGNARPALFAA 284
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A150GAB9_GONPE (Uncharacterized protein n=2 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GAB9_GONPE) HSP 1 Score: 206 bits (523), Expect = 3.860e-60 Identity = 128/274 (46.72%), Postives = 165/274 (60.22%), Query Frame = 3
Query: 348 IEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAP-TNAEDGSAIVMEQLLRSKR 1166
I +A+DVDGTL +TS + A+K G+ ATGK R DV L +TPGVF QGLVVY G G VL EQ L E+ + +E V+L+AY G+ I+C+A DA T++ Y EP P VG L A+ + VHK+I M + ID +RPGVE L+G RA+ T AL MLEVLP GASKG G+ LL HLG+DP +MALGD ENDVEML + G+G+ +GNA+P AKA+A V TN +DG A +E+ + R
Sbjct: 8 IRLIATDVDGTLLNHRQELTSGVEYAVKQAAALGVPLVFATGKARGPWI----HDVLPRLDL-DTPGVFLQGLVVYDGQG-AVLHEQRLPDEVATDCIRLAKELDVTLVAYCGERILCAATDAHTERFNFYREPPPEPVGDL-GAILGRVPVHKMIFMAEQARIDEIRPGVESLLGGRASLTTALSGMLEVLPLGASKGAGLRWLLDHLGVDPAHVMALGDGENDVEMLAMVGLGVAMGNAAPKAKASADVVLEETNDQDGVARAIEEYVVGPR 274
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A836C2C3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C2C3_9CHLO) HSP 1 Score: 206 bits (523), Expect = 9.310e-60 Identity = 124/274 (45.26%), Postives = 165/274 (60.22%), Query Frame = 3
Query: 348 IEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAP-TNAEDGSAIVMEQLLRSKR 1166
I+ +A+DVDGTL +T+ +EA+KA + G+ ATGK R DV L +TPGVF QGL+VY G L++Q L ++ E GV+L AY G+ I+C+A DA TD++ Y EP P AVG + + +HK+I M + ID +RP E L+G RA+ T AL MLEVLP GASKG+G+ LLAHLG++P +MALGD ENDVEML+LAG+G+ +GNA P AKAAA V TN +DG A + + R
Sbjct: 39 IKLIATDVDGTLLNHRQELTAGVEEAVKAARELGVPLVVATGKARGPWVA----DVLPRL-GLDTPGVFLQGLLVYDAEGRR-LYDQRLPDDVARDCIELAEREGVTLTAYCGERILCAATDAHTDRLNFYKEPPPEAVGDMRRQVGV-TEMHKMIFMADQSKIDALRPHAEALLGGRASLTTALTGMLEVLPLGASKGEGLRWLLAHLGVEPQHVMALGDGENDVEMLQLAGLGVAMGNAGPKAKAAADVVLDETNDQDGVAAAIRAYVLEPR 305
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A2W4QSP6_9CHLR (Sugar-phosphatase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4QSP6_9CHLR) HSP 1 Score: 204 bits (520), Expect = 2.600e-59 Identity = 119/272 (43.75%), Postives = 167/272 (61.40%), Query Frame = 3
Query: 348 IEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAPTNAEDGSAIVMEQLLRSK 1163
IE +A D+DGTL ++ RT A++ M+ G+ ATGKTR + + A TPGV+ QGL++Y+G G V +Q L+ E+ Q+ F V+L AYSG DI + A+TDK+A Y+EP+P+ + P A L ++K++L+D E + VR + + RAT QAL DMLE+LP GASKG G++ LL LGI P R++A+GDAEND+EML+LAG+G+ VGNA P KAAA FV +N EDG A +E+ + K
Sbjct: 41 IELIAVDLDGTLLNSQHQLSERTVNALRKAMEHGVQVVLATGKTRRSAQEAIERLDLA------TPGVYLQGLILYNGDGS-VRAQQQLEPELARQLVEFAGREAVALAAYSGLDIYTPKRSAQTDKLARYHEPLPQEI---PAAELLALPINKILLIDEPERVSEVREQLAPQVEGRATLVQALDDMLEILPFGASKGAGLKRLLDDLGIAPERVLAIGDAENDIEMLQLAGIGVAVGNAMPQTKAAADFVVASNDEDGVAEAVERFVFGK 302
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A2P6TSJ6_CHLSO (Haloacid dehalogenase-like hydrolase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSJ6_CHLSO) HSP 1 Score: 201 bits (510), Expect = 1.060e-57 Identity = 115/273 (42.12%), Postives = 169/273 (61.90%), Query Frame = 3
Query: 348 IEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAPTNAEDGSAIVMEQLLRSKR 1166
+E + SDVDGTL P +T+ T+ A++A +G+ ATGK G + DV HL + P ++ QGL++ + + VL++Q L+ I+ + +F +E+GV+L AY GD IVC D ++D++ Y EP P +VGPL E L + KLI M++++ I +RP +E+ RA+ T A+P MLEVLP GASKG GV LL LG+DP +MALGD END EML L G+G+ +GNA+P+A + + + NAEDG A +E+ + R
Sbjct: 55 VELIVSDVDGTLLNPQQQLTAGTRAALQAAAAAGVPIVVATGKA-LGPWTA---DVLPHL-GSSLPQIYLQGLLI-NCHREGVLYQQQLEEHIILEAVAFADEHGVTLTAYCGDRIVCRETDEQSDRLLFYKEPPPESVGPL-ERQVGKLPISKLIFMNSEQRIAELRPAIEQTFAGRASLTTAIPGMLEVLPLGASKGVGVSWLLDRLGVDPAAVMALGDGENDKEMLELCGLGVAMGNAAPAALSVSDAITAKNAEDGVARAVERFVLGPR 320
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A8J4BBV4_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BBV4_9CHLO) HSP 1 Score: 200 bits (509), Expect = 2.080e-57 Identity = 123/269 (45.72%), Postives = 163/269 (60.59%), Query Frame = 3
Query: 330 ASTLATIEAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAP-TNAEDGSA 1133
A+ A I+ +ASDVDGTL +T + A+K G+ ATGK R G + +V L TPGVF QGL+VY G L+EQ L ++ S + G++L AY G+ I+C+A D+ TD++ Y EP P AVG L + +++ KLI M + ID +RP VE+L+ RA+ T AL MLEVLP GASKG G+ LL HLG+DP +MALGD ENDVEML++AG+G+ +GNA P AK+AA V TN EDG A
Sbjct: 55 ATPRAEIKLIASDVDGTLLNHQQQLTPAVEAAVKQASALGVPLVVATGKAR-GPW---AHEVLPRL-GLTTPGVFLQGLLVYDADGSR-LYEQQLPADVAQDCISLAKARGITLTAYCGERILCAATDSHTDRLNFYKEPPPEAVGDLARIVGE-IQIQKLIFMADQFVIDSLRPEVEQLLTGRASLTTALSGMLEVLPLGASKGAGLSWLLEHLGVDPAHVMALGDGENDVEMLQMAGLGVAMGNAGPKAKSAADVVLEETNDEDGVA 316
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Match: A0A7S0RP72_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RP72_9CHLO) HSP 1 Score: 197 bits (500), Expect = 2.560e-56 Identity = 115/272 (42.28%), Postives = 165/272 (60.66%), Query Frame = 3
Query: 351 EAVASDVDGTLTTPDVTVTSRTKEAIKAVMDSGLVFFPATGKTRTGMYKILGEDVSAHLKAKNTPGVFSQGLVVYSGSGDEVLFEQLLDVEIVSQVASFCEENGVSLIAYSGDDIVCSAKDAETDKIALYYEPMPRAVGPLPEAMAAGLRVHKLILMDTKEAIDRVRPGVERLIGERATFTQALPDMLEVLPPGASKGKGVEILLAHLGIDPTRLMALGDAENDVEMLRLAGVGICVGNASPSAKAAARFVAPTNAEDGSAIVMEQLLRSKR 1166
+ + +DVDGTL +T RT++A+KA D+G+ ATGKTR K DV L PG+F QGL++Y +G E+++ L I + F +++GVSLIA+ D I+C ++D TD+ + EP A+GPL + + + +HKLILM + ++R+RP E L RA T A+P MLE+LP GASKG+ VE LL H+ IDP+ +MA GD ENDVEMLRL G + V NA A++A+ V +N EDG A +E+ + + R
Sbjct: 47 QLIVTDVDGTLLNSSQQLTLRTEQAVKAAQDAGVPTIVATGKTRGPWSK----DVLPRL-GPPMPGIFVQGLLIYDEAG-EIIYSNPLPDHIALEGIQFAKKHGVSLIAFCQDRILCESEDEHTDRTLDFGEPRAEAMGPLEDVLGE-VEMHKLILMGEESTLERIRPEAEALFEGRAALTVAVPGMLEILPKGASKGQAVEWLLNHMKIDPSNVMAFGDGENDVEMLRLVGASVSVENAGTHARSASITVTASNDEDGVAQAIEKFVLAPR 311 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15645.1 >prot_C-linearis_contig8.15645.1 ID=prot_C-linearis_contig8.15645.1|Name=mRNA_C-linearis_contig8.15645.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=366bp MISHLVKGCLCLRLLPSAAAAAVSTTARGAQRATYYHHHHRRPVAFGWTGback to top mRNA from alignment at C-linearis_contig8:2196310..2199059+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15645.1 ID=mRNA_C-linearis_contig8.15645.1|Name=mRNA_C-linearis_contig8.15645.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2750bp|location=Sequence derived from alignment at C-linearis_contig8:2196310..2199059+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2196310..2199059+ >mRNA_C-linearis_contig8.15645.1 ID=mRNA_C-linearis_contig8.15645.1|Name=mRNA_C-linearis_contig8.15645.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at C-linearis_contig8:2196310..2199059+ (Chordaria linearis ClinC8C monoicous)back to top |