prot_C-linearis_contig8.15602.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15602.1
Unique Nameprot_C-linearis_contig8.15602.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length405
Homology
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BLAST of mRNA_C-linearis_contig8.15602.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 4.270e-107
Identity = 190/358 (53.07%), Postives = 216/358 (60.34%), Query Frame = 0 
Query:   15 IVVREMRNP--------GMISEIAFSSDGCHILMGARNLAVRVWNIRSGAVDLVAPPLAGSNDDGGYHAGHLSCD-TLQHPTRGLLMAAAGATGGVLVWDSCLEPVAASEETAVGGPRPTADLRNNGHEYGIPVNHLAAYPDGSFFVSADSTTLKFWCAEDLTCKRTIRSTFEVQILMVSAKGKFVFVVGENGGVDGGGNRRKTSKRRAVVAVWDGRKRGKIYPGYGGELDPTRLLIGHGRAIQSLYTPENPDVLVTSALDAMIKIWDVPTGTCTKSVWSKGGLKSPLSYAALVNRGAWLLTSCENGSXXXXXXXXXXX----LITLVNTTGTAPATTTSSLPLR--TARLAVSRCGR 357
            IVVRE+R+P        G ISEIAFS+DG H+L GA+N AVR+W  RSG V+L+APPLAGSN+DGGYHAGHLSCD  L HP+RG+LM                                                                    FWCA+D TCKRTIRSTF V+ILMVSA+GKFVFV GE G              RAVVAVWDGRKRGKIYPG+GGE DPTRLL GHGR I+SLYTP NPDVLVT+ALDA +KIWDVPTGTCTK++WSKGGL+SPLS A LVN GAWLLTS ++GS               L+TLVN    A A    ++  R   ARLAVSRCGR
Sbjct:   21 IVVREIRSPSAGGGRAGGDISEIAFSADGAHLLTGAKNFAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM--------------------------------------------------------------------FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXX-----XXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNHGAWLLTSYDDGSLQTTGQVWIIQTGKCLLTLVNAAAAAAAADGVAVLPRPGAARLAVSRCGR 305
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15602.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI4.270e-10753.07WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 234..273
e-value: 0.052
score: 22.7
coord: 276..318
e-value: 23.0
score: 8.4
coord: 121..163
e-value: 1.3
score: 16.4
coord: 13..51
e-value: 1.8
score: 15.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 237..273
e-value: 0.18
score: 12.7
coord: 132..162
e-value: 0.22
score: 12.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 241..282
score: 12.714
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 26..60
score: 8.771
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 7..201
e-value: 2.6E-12
score: 48.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 203..393
e-value: 3.0E-15
score: 58.1
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 132..378
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 260..274
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 38..52
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 241..327
score: 15.03
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 19..60
score: 8.756
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 16..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1766207..1768437 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15602.1mRNA_C-linearis_contig8.15602.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1766207..1768638 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15602.1 ID=prot_C-linearis_contig8.15602.1|Name=mRNA_C-linearis_contig8.15602.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=405bp
MPTRAHNESTGRSPIVVREMRNPGMISEIAFSSDGCHILMGARNLAVRVW
NIRSGAVDLVAPPLAGSNDDGGYHAGHLSCDTLQHPTRGLLMAAAGATGG
VLVWDSCLEPVAASEETAVGGPRPTADLRNNGHEYGIPVNHLAAYPDGSF
FVSADSTTLKFWCAEDLTCKRTIRSTFEVQILMVSAKGKFVFVVGENGGV
DGGGNRRKTSKRRAVVAVWDGRKRGKIYPGYGGELDPTRLLIGHGRAIQS
LYTPENPDVLVTSALDAMIKIWDVPTGTCTKSVWSKGGLKSPLSYAALVN
RGAWLLTSCENGSLQVWGVDTGKCLITLVNTTGTAPATTTSSLPLRTARL
AVSRCGRLAGFAVGRRIKVLDLDRLADRSAAAGPPGQPGAYLRQALRFVT
LPAM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf