mRNA_C-linearis_contig8.15602.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15602.1
Unique NamemRNA_C-linearis_contig8.15602.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15602.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.400e-106
Identity = 190/358 (53.07%), Postives = 216/358 (60.34%), Query Frame = 1 
Query:  244 IVVREMRNP--------GMISEIAFSSDGCHILMGARNLAVRVWNIRSGAVDLVAPPLAGSNDDGGYHAGHLSCD-TLQHPTRGLLMAAAGATGGVLVWDSCLEPVAASEETAVGGPRPTADLRNNGHEYGIPVNHLAAYPDGSFFVSADSTTLKFWCAEDLTCKRTIRSTFEVQILMVSAKGKFVFVVGENGGVDGGGNRRKTSKRRAVVAVWDGRKRGKIYPGYGGELDPTRLLIGHGRAIQSLYTPENPDVLVTSALDAMIKIWDVPTGTCTKSVWSKGGLKSPLSYAALVNRGAWLLTSCENGSXXXXXXXXXXX----LITLVNTTGTAPATTTSSLPLR--TARLAVSRCGR 1272
            IVVRE+R+P        G ISEIAFS+DG H+L GA+N AVR+W  RSG V+L+APPLAGSN+DGGYHAGHLSCD  L HP+RG+LM                                                                    FWCA+D TCKRTIRSTF V+ILMVSA+GKFVFV GE G              RAVVAVWDGRKRGKIYPG+GGE DPTRLL GHGR I+SLYTP NPDVLVT+ALDA +KIWDVPTGTCTK++WSKGGL+SPLS A LVN GAWLLTS ++GS               L+TLVN    A A    ++  R   ARLAVSRCGR
Sbjct:   21 IVVREIRSPSAGGGRAGGDISEIAFSADGAHLLTGAKNFAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM--------------------------------------------------------------------FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXX-----XXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPDVLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNHGAWLLTSYDDGSLQTTGQVWIIQTGKCLLTLVNAAAAAAAADGVAVLPRPGAARLAVSRCGR 305
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI1.400e-10653.07WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1766207..1768638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-14_003040.1
Exons5
Model size1416
Cds size1215
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15602.1prot_C-linearis_contig8.15602.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 1766207..1768437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.9754233-CDS-C-linearis_contig8:1766206..17664761622930533.9754233-CDS-C-linearis_contig8:1766206..1766476Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1766207..1766476 -
1690881118.6753275-CDS-C-linearis_contig8:1766206..17664761690881118.6753275-CDS-C-linearis_contig8:1766206..1766476Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1766207..1766476 -
1622930533.9924295-CDS-C-linearis_contig8:1766652..17668251622930533.9924295-CDS-C-linearis_contig8:1766652..1766825Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1766653..1766825 -
1690881118.6878119-CDS-C-linearis_contig8:1766652..17668251690881118.6878119-CDS-C-linearis_contig8:1766652..1766825Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1766653..1766825 -
1622930534.0090053-CDS-C-linearis_contig8:1767070..17673621622930534.0090053-CDS-C-linearis_contig8:1767070..1767362Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1767071..1767362 -
1690881118.699097-CDS-C-linearis_contig8:1767070..17673621690881118.699097-CDS-C-linearis_contig8:1767070..1767362Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1767071..1767362 -
1622930534.0230951-CDS-C-linearis_contig8:1767681..17679691622930534.0230951-CDS-C-linearis_contig8:1767681..1767969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1767682..1767969 -
1690881118.7111032-CDS-C-linearis_contig8:1767681..17679691690881118.7111032-CDS-C-linearis_contig8:1767681..1767969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1767682..1767969 -
1622930534.0376387-CDS-C-linearis_contig8:1768245..17684371622930534.0376387-CDS-C-linearis_contig8:1768245..1768437Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1768246..1768437 -
1690881118.7253911-CDS-C-linearis_contig8:1768245..17684371690881118.7253911-CDS-C-linearis_contig8:1768245..1768437Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 1768246..1768437 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930534.078776-UTR-C-linearis_contig8:1768437..17686381622930534.078776-UTR-C-linearis_contig8:1768437..1768638Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1768438..1768638 -
1690881118.7388344-UTR-C-linearis_contig8:1768437..17686381690881118.7388344-UTR-C-linearis_contig8:1768437..1768638Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 1768438..1768638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15602.1

>prot_C-linearis_contig8.15602.1 ID=prot_C-linearis_contig8.15602.1|Name=mRNA_C-linearis_contig8.15602.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=405bp
MPTRAHNESTGRSPIVVREMRNPGMISEIAFSSDGCHILMGARNLAVRVW
NIRSGAVDLVAPPLAGSNDDGGYHAGHLSCDTLQHPTRGLLMAAAGATGG
VLVWDSCLEPVAASEETAVGGPRPTADLRNNGHEYGIPVNHLAAYPDGSF
FVSADSTTLKFWCAEDLTCKRTIRSTFEVQILMVSAKGKFVFVVGENGGV
DGGGNRRKTSKRRAVVAVWDGRKRGKIYPGYGGELDPTRLLIGHGRAIQS
LYTPENPDVLVTSALDAMIKIWDVPTGTCTKSVWSKGGLKSPLSYAALVN
RGAWLLTSCENGSLQVWGVDTGKCLITLVNTTGTAPATTTSSLPLRTARL
AVSRCGRLAGFAVGRRIKVLDLDRLADRSAAAGPPGQPGAYLRQALRFVT
LPAM*
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mRNA from alignment at C-linearis_contig8:1766207..1768638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15602.1 ID=mRNA_C-linearis_contig8.15602.1|Name=mRNA_C-linearis_contig8.15602.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2432bp|location=Sequence derived from alignment at C-linearis_contig8:1766207..1768638- (Chordaria linearis ClinC8C monoicous)
GGGAGGAAGAGGAGTGCAGAGACTTGGGGTTGTAGGTTGTTTGTGGTGGG
ACAAGGCGGTTTGGAAGAGCCGGGGGTCAAGCGTTGTCGGACCTAGAGGG
AGCCAAGCGATATAGACACAGTAGACATGCGTCTCATGCCCAACGGGAGA
CAAGTGGAGACAGGGCATGCCCGTGCGTGAGGGCGTCACCGGCCGTTTAA
AATGCCAACACGGGCGCACAATGAAAGCACAGGTCGGTCACCGATCGTTG
TGCGGGAAATGAGGAACCCTGGGATGATTTCGGAGATTGCCTTTTCGAGC
GACGGCTGCCACATCCTCATGGGCGCGAGAAACTTGGCCGTCCGTGTGTG
GAACATACGTTCCGGCGCGGTGGACCTGGTTGCACCGCCTTTGGTAAGTT
GGTGCCTTTCCCTCCCTCCCTCTCATTCTGTGGAGCAGGGGTGAGTGTCT
TTGAGAGTCCATGGGTACACATAAAGGATGCAGACTATCTCCCTTTTCTG
ATGTACATATGATACTTGCATCTACGCTGTCCCGTATCTAGACTACATGC
ATACAGTAGCAGATCACAGGAGGAGAGGTGCGCGACGGGAGGCCTTTCGA
CAGCGCCATCGATCCGCTTGAAACATGGTGAACACAACCAGCGAACGAAT
AAACACAAACGACCCGCAGGCCGGCTCAAACGACGACGGAGGTTACCACG
CGGGTCACCTGAGCTGCGACACCCTCCAACACCCCACCAGAGGCCTGCTC
ATGGCGGCCGCAGGAGCCACTGGCGGAGTCCTCGTGTGGGACAGCTGCCT
CGAGCCGGTAGCCGCGAGTGAGGAGACGGCAGTCGGTGGGCCCCGCCCAA
CCGCTGACCTGCGAAACAATGGACACGAGTACGGGATTCCAGTGAACCAC
CTCGCCGCCTATCCAGATGGGAGCTTTTTCGTCAGCGCGGATAGCACGAC
ATTGAAGGTATTCATCAAGTGCGGTCTATATCCGTGTCTATTGTAGGCCT
GATCTCACTGCAGGTGCCACCCCGCACCTGCGTCATTGTCTGTCAAGAAA
CTGCCCAGCGCACGTCTGGTTGGTAGTTTTTAGTTTTCTCTAGCCTTCCG
ATTCGCCCACCAACAGAGTATTAAAAGAAATATGCCCTAACAATAGACAT
CGTCATGGTAGACAACGAAAACCCCAAGCTAAAAATCTAGAAGCCCTCGA
AAATGAAGCACAGCAGCCAGTGGCTTACGATGCTTACAATACGCGTGTGA
CTGCTGTCTCGTGCGCCCTTCCTCAGTTTTGGTGTGCAGAAGACTTGACG
TGCAAGAGGACCATTCGGAGCACCTTCGAGGTACAGATTCTCATGGTGTC
TGCCAAAGGCAAGTTCGTCTTCGTTGTGGGGGAAAACGGCGGCGTTGATG
GCGGCGGCAACCGCAGGAAAACCAGCAAAAGGCGCGCTGTGGTCGCCGTC
TGGGACGGCCGCAAACGCGGCAAGATATACCCCGGGTACGGCGGCGAGTT
AGATCCCACCCGGCTGCTGATAGGTCATGGGAGGGCCATTCAATCCTTGT
ACACACCGGAGAACCCCGGTGAGTGAATCACCTACCTGAAGCCCGGCTGT
GAGCTGCGTACACTACGGAAGCGCTGTACATGCAGAGTAAACTCGTCTTG
AGCACAGCGTTGTCTACAGTCGGCGTGTTGCCCTCGTGCATACCTCAACA
AATGGAAAAAAATTAACGCAGAGTTTCACCCCCCCTTGTCGTCGTAATTT
GAACACATACCCGCAACATTTATGATCAATGCGCGCGGTTCGGGGGTTGG
CATTGCCCTGTAGATGTGCTGGTCACTTCGGCGCTCGACGCGATGATAAA
GATATGGGACGTCCCGACCGGCACTTGCACGAAGTCAGTATGGAGCAAAG
GGGGACTGAAATCACCTCTCTCCTACGCGGCCCTGGTCAATCGTGGCGCT
TGGCTGCTGACCTCGTGCGAGAACGGCTCCCTCCAGGTGCGACCGTGTTA
CCAACCTTCATTTCTTTTTGGTAAAACGTATACACCCTCGTTCCAGCCGC
AAACTGACGCCCTCTGGCGGCTCCAACGTCTTCTGTCTAATAGGGACCCG
TCCATGCACGCACTTAAATACGCCCCACACCTGGTGCGGTGTACGATGAA
CACATACACCAGGTGTGGGGCGTCGACACGGGGAAGTGCCTCATCACCTT
GGTCAACACAACAGGCACTGCTCCCGCGACGACGACTTCGTCACTGCCGC
TGCGCACCGCACGCCTTGCCGTATCGCGCTGCGGCCGGCTGGCAGGGTTC
GCCGTCGGGAGACGCATCAAGGTCCTAGACTTGGACAGGCTTGCCGACCG
AAGTGCCGCGGCCGGCCCACCGGGGCAGCCGGGGGCGTACCTTCGGCAGG
CGCTTCGTTTCGTCACCTTGCCAGCAATGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig8:1766207..1768638-

>mRNA_C-linearis_contig8.15602.1 ID=mRNA_C-linearis_contig8.15602.1|Name=mRNA_C-linearis_contig8.15602.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2430bp|location=Sequence derived from alignment at C-linearis_contig8:1766207..1768638- (Chordaria linearis ClinC8C monoicous)
ATGCCAACACGGGCGCACAATGAAAGCACAGGTCGGTCACCGATCGTTGT
GCGGGAAATGAGGAACCCTGGGATGATTTCGGAGATTGCCTTTTCGAGCG
ACGGCTGCCACATCCTCATGGGCGCGAGAAACTTGGCCGTCCGTGTGTGG
AACATACGTTCCGGCGCGGTGGACCTGGTTGCACCGCCTTTGATGCCAAC
ACGGGCGCACAATGAAAGCACAGGTCGGTCACCGATCGTTGTGCGGGAAA
TGAGGAACCCTGGGATGATTTCGGAGATTGCCTTTTCGAGCGACGGCTGC
CACATCCTCATGGGCGCGAGAAACTTGGCCGTCCGTGTGTGGAACATACG
TTCCGGCGCGGTGGACCTGGTTGCACCGCCTTTGGCCGGCTCAAACGACG
ACGGAGGTTACCACGCGGGTCACCTGAGCTGCGACACCCTCCAACACCCC
ACCAGAGGCCTGCTCATGGCGGCCGCAGGAGCCACTGGCGGAGTCCTCGT
GTGGGACAGCTGCCTCGAGCCGGTAGCCGCGAGTGAGGAGACGGCAGTCG
GTGGGCCCCGCCCAACCGCTGACCTGCGAAACAATGGACACGAGTACGGG
ATTCCAGTGAACCACCTCGCCGCCTATCCAGATGGGAGCTTTTTCGTCAG
CGCGGATAGCACGACATTGAAGGCCGGCTCAAACGACGACGGAGGTTACC
ACGCGGGTCACCTGAGCTGCGACACCCTCCAACACCCCACCAGAGGCCTG
CTCATGGCGGCCGCAGGAGCCACTGGCGGAGTCCTCGTGTGGGACAGCTG
CCTCGAGCCGGTAGCCGCGAGTGAGGAGACGGCAGTCGGTGGGCCCCGCC
CAACCGCTGACCTGCGAAACAATGGACACGAGTACGGGATTCCAGTGAAC
CACCTCGCCGCCTATCCAGATGGGAGCTTTTTCGTCAGCGCGGATAGCAC
GACATTGAAGTTTTGGTGTGCAGAAGACTTGACGTGCAAGAGGACCATTC
GGAGCACCTTCGAGGTACAGATTCTCATGGTGTCTGCCAAAGGCAAGTTC
GTCTTCGTTGTGGGGGAAAACGGCGGCGTTGATGGCGGCGGCAACCGCAG
GAAAACCAGCAAAAGGCGCGCTGTGGTCGCCGTCTGGGACGGCCGCAAAC
GCGGCAAGATATACCCCGGGTACGGCGGCGAGTTAGATCCCACCCGGCTG
CTGATAGGTCATGGGAGGGCCATTCAATCCTTGTACACACCGGAGAACCC
CGTTTTGGTGTGCAGAAGACTTGACGTGCAAGAGGACCATTCGGAGCACC
TTCGAGGTACAGATTCTCATGGTGTCTGCCAAAGGCAAGTTCGTCTTCGT
TGTGGGGGAAAACGGCGGCGTTGATGGCGGCGGCAACCGCAGGAAAACCA
GCAAAAGGCGCGCTGTGGTCGCCGTCTGGGACGGCCGCAAACGCGGCAAG
ATATACCCCGGGTACGGCGGCGAGTTAGATCCCACCCGGCTGCTGATAGG
TCATGGGAGGGCCATTCAATCCTTGTACACACCGGAGAACCCCGATGTGC
TGGTCACTTCGGCGCTCGACGCGATGATAAAGATATGGGACGTCCCGACC
GGCACTTGCACGAAGTCAGTATGGAGCAAAGGGGGACTGAAATCACCTCT
CTCCTACGCGGCCCTGGTCAATCGTGGCGCTTGGCTGCTGACCTCGTGCG
AGAACGGCTCCCTCCAGATGTGCTGGTCACTTCGGCGCTCGACGCGATGA
TAAAGATATGGGACGTCCCGACCGGCACTTGCACGAAGTCAGTATGGAGC
AAAGGGGGACTGAAATCACCTCTCTCCTACGCGGCCCTGGTCAATCGTGG
CGCTTGGCTGCTGACCTCGTGCGAGAACGGCTCCCTCCAGGTGTGGGGCG
TCGACACGGGGAAGTGCCTCATCACCTTGGTCAACACAACAGGCACTGCT
CCCGCGACGACGACTTCGTCACTGCCGCTGCGCACCGCACGCCTTGCCGT
ATCGCGCTGCGGCCGGCTGGCAGGGTTCGCCGTCGGGAGACGCATCAAGG
TCCTAGACTTGGACAGGCTTGCCGACCGAAGTGCCGCGGCCGGCCCACCG
GGGCAGCCGGGGGCGTACCTTCGGCAGGCGCTTCGTTTCGTCACCTTGCC
AGCAATGTGAGTGTGGGGCGTCGACACGGGGAAGTGCCTCATCACCTTGG
TCAACACAACAGGCACTGCTCCCGCGACGACGACTTCGTCACTGCCGCTG
CGCACCGCACGCCTTGCCGTATCGCGCTGCGGCCGGCTGGCAGGGTTCGC
CGTCGGGAGACGCATCAAGGTCCTAGACTTGGACAGGCTTGCCGACCGAA
GTGCCGCGGCCGGCCCACCGGGGCAGCCGGGGGCGTACCTTCGGCAGGCG
CTTCGTTTCGTCACCTTGCCAGCAATGTGA
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