mRNA_C-linearis_contig8.15547.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A6H5JCP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP2_9PHAE) HSP 1 Score: 384 bits (985), Expect = 9.130e-123 Identity = 226/433 (52.19%), Postives = 252/433 (58.20%), Query Frame = 2
Query: 62 LIRALLVSCLVWPLGRCCTAA----PSPDRATARRSFLLENTNRQHDLRARLQTTHNDGGGPLRAGLLLGRALCVCGGETGDALA-GQRQKWWKGVNRKPLPAPEALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEV--------------------------------------------------------------------------------------------------------EYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLPQMV 1033
L++ +L+ + W R C AA P P T L N N D + + N P + +L G + GG A G R KW GVNR+ +P PEALSRYP+FK+PGGLVR LDYVGTVSFAMSGAATAGMRGMNLLGC+FVGVLAATGGGT+RDLLLGQTPVFWLVEV EYVTICVVTA+VTFV WP+LSRVS+LSHMGTG+DGWLSQAIDT+GLASFAVA TQ+GIRR HPG TIVICCITCSGGGILRDVLTSSPVM LS HAQMYVST A GS AYL ARR S+DPL RIC GFFTV+ILR LAC+YDLRLP+MV
Sbjct: 4 LLKCILLLSVAW--RRPCAAAELWRPQPQPPTP----LARNHNGDSDPGGQDRIFPNSSSAPRQTVVLPGTVVHARGGGINVAFTRGSRNKWQDGVNRRAIPTPEALSRYPNFKSPGGLVRFLDYVGTVSFAMSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVEVGVRGAWIVLFFCGAGDLVGRSLCPTSPCAFLRFLACLDAWVELALRRFCSVDGGVGCLPSLALLFLIGRIWRCLLMFVLRHSSVVWPVAVLLSWTPLLLPLSQVEYVTICVVTAVVTFVLWPVLSRVSVLSHMGTGLDGWLSQAIDTVGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAIGSGAYLLARRYSKDPLFRICVGFFTVIILRLLACLYDLRLPRMV 430
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA) HSP 1 Score: 263 bits (673), Expect = 6.710e-79 Identity = 136/257 (52.92%), Postives = 173/257 (67.32%), Query Frame = 2
Query: 266 LCVCGGETGDALAGQRQKWWK--GVNRKPLPAPEALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLPQM 1030
LC+C G A ++ W K N+ LP E+++RYPS ++ GGL+R LDY+GTV+FA GA AG GM+LLGC+ +GV+ A GGGT RDLLLGQTPVFWL EVEY+ +C+VT++ TF WP L + ILS G+ DG L + +DTIGL +FAV GTQHGIRR HP T+VI ITCS GG+ RDV+T +P+ V+ HA++Y +T A GS AYL AR DPL R+ AGF V R A DLRLP +
Sbjct: 13 LCICSPSAGAATP-VKKAWLKIKNANQGDLPR-ESMTRYPSLRSAGGLLRSLDYLGTVAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLPTL 267
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: D8LLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ7_ECTSI) HSP 1 Score: 237 bits (604), Expect = 1.020e-69 Identity = 128/185 (69.19%), Postives = 133/185 (71.89%), Query Frame = 2
Query: 443 MSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRAL 997
MSGAATAGMRGMNLLGC+FVGVLAATGGGT+RDLLLGQTPVFWLVE AIDTIGLASFAVA TQ+GIRR HPG TIVICCITCSGGGILRDVLTSSPVM LS HAQMYVST AFGS AYL ARR S+DPL R+CAGFFTVVILR L
Sbjct: 1 MSGAATAGMRGMNLLGCIFVGVLAATGGGTVRDLLLGQTPVFWLVE----------------------------------------AIDTIGLASFAVAATQNGIRRKCHPGTTIVICCITCSGGGILRDVLTSSPVMALSSHAQMYVSTAAFGSGAYLLARRYSKDPLFRVCAGFFTVVILRLL 145
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI) HSP 1 Score: 194 bits (494), Expect = 1.640e-52 Identity = 98/231 (42.42%), Postives = 140/231 (60.61%), Query Frame = 2
Query: 332 VNRKPLPAPEALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLP 1024
+NR P + L+RYP+F++P G++R LDY+GT FA+SG TAG GM+LLGC+ VG + ATGGGT+RD+LLG TPVFW+ E EY+ +C+ T + F W S L+ G D L +D +G+ +F G Q G+R+ + + +T + GG++RDVL S P +L H ++Y ST GSA Y+ + P+ RI +GF + V LR LA D+RLP
Sbjct: 61 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLW------SYLAERGVRDDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 285
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE) HSP 1 Score: 195 bits (496), Expect = 7.570e-52 Identity = 98/231 (42.42%), Postives = 141/231 (61.04%), Query Frame = 2
Query: 332 VNRKPLPAPEALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLP 1024
+NR P + L+RYP+F++P G++R LDY+GT FA+SG TAG GM+LLGC+ VG + ATGGGT+RD+LLG TPVFW+ E EY+ +C+ T++ F W S L+ G D L +D +G+ +F G Q G+R+ + + +T + GG++RDVL S P +L H ++Y ST GSA Y+ + P+ RI +GF + V LR LA D+RLP
Sbjct: 143 INRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHETEYLWMCLATSVGVFFLW------SYLAERGVRNDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLP 367
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A5J4Z897_PORPP (UPF0126 membrane protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z897_PORPP) HSP 1 Score: 184 bits (466), Expect = 5.260e-48 Identity = 95/222 (42.79%), Postives = 132/222 (59.46%), Query Frame = 2
Query: 359 EALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLP 1024
+++ RYP +PGG +R DY+GT FA++GA TA GM++LGC VG + A GGGT RDLL+G PVFWL+E EY+ I V T+L+ F FWP +S +G D + ID+ L +F+ GT +GIR +P I +V +TC+ GG++RD PV VL +A++Y +T A GS AY+ AR + RI G + I+R A Y RLP
Sbjct: 122 DSMPRYPDL-SPGGFLRAFDYIGTSIFALTGALTAASGGMDVLGCTVVGTITAVGGGTTRDLLMGARPVFWLIESEYIAIAVATSLLAFFFWPDVS-----DALGITEDEYFINVIDSWSLGAFSCIGTMNGIRAGYNPLIVLVCAVVTCTFGGVVRDTFLKRPVRVLHSYAEIYATTAAVGSIAYMAARAMQLPLVLRISLGLSSTFIMRLWAMKYGTRLP 337
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA) HSP 1 Score: 181 bits (460), Expect = 5.310e-48 Identity = 100/239 (41.84%), Postives = 130/239 (54.39%), Query Frame = 2
Query: 359 EALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLPQMV*CWGDFIPVCVAEA 1075
+ L+RYPS +P G++R LD GTV FA SG TAG GM+LLGC VG + A GGGT+RDLLLG TPVFW+ E EY+ IC+ A+ TF + S L+ G D L D +G+ +F V G Q+ +RR I + T + GG++RDVL P +L HA++Y ST G+ Y+ RR P+ RI GF LR A LRLP P+ AEA
Sbjct: 22 DGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTY------SALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWAQSPQPQQPLRTAEA 254
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A7S1TDV4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDV4_9RHOD) HSP 1 Score: 176 bits (446), Expect = 6.640e-47 Identity = 94/224 (41.96%), Postives = 133/224 (59.38%), Query Frame = 2
Query: 359 EALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLPQM 1030
+ + R+P++ GGL+R LDY GT+ FA SG A GM+LLGC VG + A GGGT+RDL LG PVFW+VE EY+ +C++T+ +T WP+L+R S S ++ + D GL++F V G Q+GIR P I++V +T + GG++RDVL P +L HA++Y S A G+A+Y+ A R RI G + R A YD+RLP M
Sbjct: 6 DGMPRFPNWSA-GGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 224
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A7S1XFC8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFC8_9RHOD) HSP 1 Score: 176 bits (446), Expect = 8.570e-46 Identity = 94/224 (41.96%), Postives = 133/224 (59.38%), Query Frame = 2
Query: 359 EALSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLPQM 1030
+ + R+P++ GGL+R LDY GT+ FA SG A GM+LLGC VG + A GGGT+RDL LG PVFW+VE EY+ +C++T+ +T WP+L+R S S ++ + D GL++F V G Q+GIR P I++V +T + GG++RDVL P +L HA++Y S A G+A+Y+ A R RI G + R A YD+RLP M
Sbjct: 96 DGMPRFPNWSA-GGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYS----DAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPTM 314
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Match: A0A6T5MA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MA33_HETAK) HSP 1 Score: 175 bits (443), Expect = 2.680e-45 Identity = 102/252 (40.48%), Postives = 136/252 (53.97%), Query Frame = 2
Query: 317 KWWKGVNRKPLPAPEA---------LSRYPSFKTPGGLVRLLDYVGTVSFAMSGAATAGMRGMNLLGCVFVGVLAATGGGTLRDLLLGQTPVFWLVEVEYVTICVVTALVTFVFWPILSRVSILSHMGTGMDGWLSQAIDTIGLASFAVAGTQHGIRRAAHPGITIVICCITCSGGGILRDVLTSSPVMVLSEHAQMYVSTTAFGSAAYLYARRRSRDPLTRICAGFFTVVILRALACMYDLRLPQMV*CWG 1045
K + N+ P AP A + R+PS GGL+R LDY GTV FA+ G+ TAG+ GM+LLGC VG + A GGGT+RDLLLG PVFW++E EYV + + A F W L L + W D G+ +F+V G Q+G+R HP + +V IT + GG++RDVL P +L +++Y +T G+AAY AR S P +I GF V R A YD+RLP WG
Sbjct: 81 KRFNSTNKPPAEAPPAAKPPVHTDGMPRFPSTSA-GGLLRGLDYFGTVVFALGGSVTAGLAGMDLLGCTIVGTVTAVGGGTVRDLLLGNFPVFWMLETEYVLLSLACAWAGFFGWDYLHEHWHLEENSDILRWW-----DACGVGAFSVIGAQNGLRAGLHPAVAVVCGMITATFGGMIRDVLCQKPPRILHSQSEVYATTALIGAAAYTAAR--SLPPAAKIGLGFSAAVASRYAAWTYDIRLPN----WG 320 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15547.1 >prot_C-linearis_contig8.15547.1 ID=prot_C-linearis_contig8.15547.1|Name=mRNA_C-linearis_contig8.15547.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=329bp MLVLLIRALLVSCLVWPLGRCCTAAPSPDRATARRSFLLENTNRQHDLRAback to top mRNA from alignment at C-linearis_contig8:1224074..1232339+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15547.1 ID=mRNA_C-linearis_contig8.15547.1|Name=mRNA_C-linearis_contig8.15547.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8266bp|location=Sequence derived from alignment at C-linearis_contig8:1224074..1232339+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:1224074..1232339+ >mRNA_C-linearis_contig8.15547.1 ID=mRNA_C-linearis_contig8.15547.1|Name=mRNA_C-linearis_contig8.15547.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at C-linearis_contig8:1224074..1232339+ (Chordaria linearis ClinC8C monoicous)back to top |