mRNA_C-linearis_contig78.15361.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: D7G8V6_ECTSI (Rad51 homolog C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V6_ECTSI) HSP 1 Score: 465 bits (1197), Expect = 2.430e-160 Identity = 260/306 (84.97%), Postives = 275/306 (89.87%), Query Frame = 2
Query: 2 KKAIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHSSRAAXXXXXXXXXXXXXXXKRSSLPSSAAQQHQQPAAKRHVGNAPNQ 910
KK IITFCRE+DGM+GGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIA+NKRKQG PD+E+ VPTQEA LGG+HVWRLHDHAEQLAAVRTLP+FLVAHP+VKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQ HSLAVVLVNQMTTKV+ GH GESSLVPALGESWAHAATNR + G +RFAELLKSPRLR+KTVPFSVV VGIRD SSRA XXXXXXXXXXXXXXX A++ Q AAKRHVG+ NQ
Sbjct: 36 KKPIITFCREIDGMMGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIARNKRKQGVPDLESAVPTQEAFLGGIHVWRLHDHAEQLAAVRTLPEFLVAHPEVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQAHSLAVVLVNQMTTKVMTGHRGESSLVPALGESWAHAATNRLLLLWKGQERFAELLKSPRLRRKTVPFSVVGVGIRDTQSSRAXXXXXXXXXXXXXXXXXXXXXXXXASEGQYQ-AAKRHVGHHANQ 340
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A835ZD48_9STRA (Rad51-like protein c n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD48_9STRA) HSP 1 Score: 278 bits (712), Expect = 2.950e-86 Identity = 153/273 (56.04%), Postives = 188/273 (68.86%), Query Frame = 2
Query: 5 KAIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDME------ATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKL------------VVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
+ I+ F R++D M GGGVPRGELTE+ GTPG+GKTQFGMQLAVDVQIP FGGVGG A+YIDTEGS T ER++Q+ A+V HL +++ RK+ P A + T+E LL +HV+R+HDHAEQLAAVR LP F+ + VV+DSVAFHFRHA DM++R RML+ M QQLN++A++ SLAVVL NQMT + +G GE LV ALG++WAHAATNR + N RFA LLKS R TVPF V RVGIRD
Sbjct: 103 RGIVCFSRKIDDMFGGGVPRGELTEIMGTPGIGKTQFGMQLAVDVQIPVLFGGVGGEAVYIDTEGSFTPERVAQMADALVSHLARVSAAHRKKQTPAQAEQWAAAAALVTREYLLRRIHVFRVHDHAEQLAAVRALPAFVASRSGXXXXXXXXXXXXXXXVVLDSVAFHFRHACADMALRARMLATMGQQLNQLAREQSLAVVLTNQMTKRYDSGRNGEEKLVAALGDTWAHAATNRLMLFWKENQRFASLLKSSRREPATVPFIVDRVGIRD 375
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI001425896F (DNA repair protein RAD51 homolog 3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425896F) HSP 1 Score: 257 bits (656), Expect = 2.740e-78 Identity = 135/258 (52.33%), Postives = 179/258 (69.38%), Query Frame = 2
Query: 8 AIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQ-GFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHS 769
++ITFC E+D MLGGG+P G+ TE+CG PGVGKTQ +QLAVDVQIP +FGG+ G A+YIDTEGS VER S++ AVVEH +A ++ ME T++ +L G+H R D+ E +A + TLPKFL HP V+L+V+DSVAFHFRH +++S+RTR+L+ +AQ L ++A ++++AVVL NQMTTK GG S L+PALGESW HAAT R + GN R A L KSP ++ TVP+ V G+R S
Sbjct: 85 SVITFCEEMDNMLGGGIPLGKTTEICGAPGVGKTQICIQLAVDVQIPEEFGGLEGEAMYIDTEGSFMVERASEIAKAVVEHCGNVAASQNNNVQLKSMEKF--TEDGILAGIHYTRCQDYIELIAFINTLPKFLSNHPKVRLIVIDSVAFHFRHDIENLSLRTRLLNGLAQNLIKLAMENTVAVVLTNQMTTKFGREDGG-SKLIPALGESWGHAATVRLILYWQGNQRLAMLYKSPSRQEMTVPYQVTNCGVRSIPS 339
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI00201F1787 (DNA repair protein RAD51 homolog 3-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F1787) HSP 1 Score: 252 bits (644), Expect = 1.460e-76 Identity = 136/258 (52.71%), Postives = 171/258 (66.28%), Query Frame = 2
Query: 11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPT--QEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHS 769
I TF ++D +LGGGVP ++TE CG PG+GKTQ MQL +DVQIP FGG+ G +Y+DTEGS VERL + SA VEH IA + G D++ E LL G+H +R HD+ E L+ V LPKF+ H VKLV++DS+AFHFRH F DMS+RTR+L+ MAQ +A +H LAVVL NQMTTK+ G GG S L+PALGESW HA+T R V GN+R+A L KSP ++ VPF + GIRD S
Sbjct: 91 IFTFSEKLDDILGGGVPLAKITEFCGAPGIGKTQVCMQLGIDVQIPECFGGLDGETVYVDTEGSFIVERLVDIASATVEHCNNIA---QMDGSVDVKEAANNFNLEKLLSGIHYFRCHDYIELLSTVHLLPKFVSEHKKVKLVIVDSIAFHFRHDFDDMSLRTRLLTSMAQSFIRLATEHKLAVVLTNQMTTKM--GGGGGSHLIPALGESWGHASTIRVVLYWEGNNRYALLYKSPSKKEAVVPFQITMGGIRDVQS 343
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI001CF10B6B (DNA repair protein RAD51 homolog 3-like isoform X1 n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF10B6B) HSP 1 Score: 251 bits (641), Expect = 1.100e-75 Identity = 129/265 (48.68%), Postives = 182/265 (68.68%), Query Frame = 2
Query: 8 AIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQ-------EALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRDAHSS 772
+I+TFC ++D MLGGGVP G++TE CG PG+GKTQ G+QLAVDVQIP +FGG+ G A+YIDTEGS VER+ + +A V+H++ +A + + E ++ T+ E +L ++V+R HD+ + +A LP FL+ H VKL+V+DS+AF FRH F D+++RTR+L+ +AQ ++A ++ LAVVL+NQMTT+V G+S L+PALGESW HA+T R V N RFA L KSP ++ TVPF + G+RD SS
Sbjct: 94 SIVTFCEQLDDMLGGGVPVGKITEFCGAPGIGKTQIGIQLAVDVQIPDEFGGLNGEAIYIDTEGSFIVERVVDIAAAAVKHMEHVAHSSE---IDETERSLQTEAMRNFQVENILSKIYVFRCHDYMQLIALSHVLPDFLLEHSKVKLIVVDSIAFQFRHDFDDLALRTRLLNGLAQSFIKMACENQLAVVLMNQMTTRVKTSQLGQSHLIPALGESWGHASTIRIVLYWEENQRFANLYKSPSRQEMTVPFKITGDGVRDCFSS 355
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: UPI00148A3B53 (DNA repair protein RAD51 homolog 3-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A3B53) HSP 1 Score: 249 bits (637), Expect = 1.280e-75 Identity = 134/253 (52.96%), Postives = 174/253 (68.77%), Query Frame = 2
Query: 11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
IITF +D MLGGGVP ++TE CG PGVGKTQ MQ+AVDVQIP QFGG+ G A+YIDTEGS VERL + A V+H ++A R +GF + E TV E++L GVH +R HD+ E LA V LP+F+ HP +K+V++DSVAFHFRH F D+S+RTR+L+ MAQ ++A + +A+VL NQMTTK G +S LVPALGESW HA+T R + G R+A L KSP ++ VP+ + G+RD
Sbjct: 90 IITFSEGLDNMLGGGVPLCKITEFCGAPGVGKTQMCMQIAVDVQIPSQFGGLQGEAVYIDTEGSFIVERLVDIAKATVDHCNEMA---RLEGFKEGEITV---ESVLSGVHFYRCHDYVELLATVHLLPEFIKKHPKIKVVLVDSVAFHFRHDFDDLSLRTRLLTTMAQSFIKLATEFKIAIVLTNQMTTKFSPGE--DSRLVPALGESWGHASTIRVILYWEGQKRWAWLYKSPSKKESRVPYQITMGGVRD 334
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A6P4XU31_BRABE (DNA repair protein RAD51 homolog 3-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XU31_BRABE) HSP 1 Score: 249 bits (637), Expect = 1.930e-75 Identity = 134/255 (52.55%), Postives = 172/255 (67.45%), Query Frame = 2
Query: 11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIA--KNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
IITFC +D +LGGGVP ++TE CG PGVGKTQ GMQLA+DVQIP FGG+GG A+Y+DTEGS V RL + A VEH + IA +N R+Q + TV E +L +H +R+HD E +A + LP+FL HP ++LVVMDS+AF FRH F+D+S+RTR+L+ +AQ +A H AVVLVNQMTTK+ G++ LVPALGESW HA+T R + R+A L KSP + TVP+ V GIRD
Sbjct: 88 IITFCSALDELLGGGVPLTKITEFCGAPGVGKTQMGMQLAIDVQIPCVFGGLGGEAVYVDTEGSFMVHRLEDMAKAAVEHCRHIATVENNREQLEAMSDFTV---EHILSRIHFYRVHDWVELVALINILPEFLQQHPKIRLVVMDSIAFPFRHDFEDLSLRTRLLNGLAQNCIRLADSHKAAVVLVNQMTTKMGHSGDGQAHLVPALGESWGHASTIRVLLFWEAGYRYARLYKSPTREEATVPYQVTMAGIRD 339
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A6P8I9R4_ACTTE (DNA repair protein RAD51 homolog 3-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I9R4_ACTTE) HSP 1 Score: 249 bits (637), Expect = 4.740e-75 Identity = 128/262 (48.85%), Postives = 175/262 (66.79%), Query Frame = 2
Query: 11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIA---------KNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
++TFC +D MLGGGVP G++TE CG PG+GKTQ GMQLAVDVQIP +FGGV G A+YIDTEGS V+R+ + SA ++HL+ + +N + + D + E +L ++++R H++ + +A LP+FL HP VKL+V+DS+AFHFRH F+DM +RTR+L+ +AQ +A ++ LAVVL+NQMTT+V G+S L+PALGESW HA+T R V R A L KSP ++ TVPF V GIRD
Sbjct: 80 VVTFCERLDDMLGGGVPTGKITEFCGAPGIGKTQIGMQLAVDVQIPEEFGGVDGAAVYIDTEGSFIVDRVVDIASAAIKHLENVTESADLDESERNLQIESLKDFQV-----EKILSRIYIFRCHEYIQLVALSHLLPEFLKEHPKVKLIVVDSIAFHFRHDFEDMGLRTRLLNGLAQTFIRLACENQLAVVLMNQMTTRVRQNQIGQSHLIPALGESWGHASTIRIVLYWENKQRLATLYKSPTKQEMTVPFQVTSSGIRD 336
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A8B6HFA0_MYTGA (RAD51-like protein 2 n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6HFA0_MYTGA) HSP 1 Score: 249 bits (636), Expect = 5.310e-75 Identity = 133/253 (52.57%), Postives = 171/253 (67.59%), Query Frame = 2
Query: 11 IITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGHGGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
IITF ++D MLGGGVP ++TE CG PG+GKTQ MQLAVDVQIP FGG+ G +YIDTEGS VERL + +A ++H Q+I++ + + + T E +L +H +R HD+ E LA V LP F+ HP VKLVV+DS+AFHFRH F D S+RTR+L+ MAQ ++A ++ +AVVL NQMTTKV HG S LVPALGESW HA+T R + G R+A L KSP ++ TVP+ V GIRD
Sbjct: 123 IITFSEQIDAMLGGGVPLCKITEFCGAPGIGKTQMCMQLAVDVQIPECFGGLDGEVVYIDTEGSFIVERLVDVTTATIQHCQQISQMESDEETKSSMSQFTT-EKVLSRIHYYRCHDYVELLATVHLLPDFIKDHPKVKLVVVDSIAFHFRHDFDDFSLRTRLLTSMAQSFIKLATEYKIAVVLTNQMTTKVK--HGESSQLVPALGESWGHASTVRVILYWEGQQRYAWLYKSPSKKESTVPYQVTMGGIRD 372
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Match: A0A7S1SLP5_9CHLO (Hypothetical protein n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SLP5_9CHLO) HSP 1 Score: 248 bits (633), Expect = 9.350e-75 Identity = 130/257 (50.58%), Postives = 175/257 (68.09%), Query Frame = 2
Query: 5 KAIITFCREVDGMLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTVERLSQLCSAVVEHLQKIAKNKRKQGFPDMEATVPTQEALLGGVHVWRLHDHAEQLAAVRTLPKFLVAHPDVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQKHSLAVVLVNQMTTKVVAGH--GGESSLVPALGESWAHAATNRCV---GGNDRFAELLKSPRLRQKTVPFSVVRVGIRD 760
+ I+TFC +VD MLGGG+P +TE CG PGVGKTQ GMQ+AVD QIP GG+ G A+YIDTEGS +ERL + AVV+H+ + + + +A ++E++L G+H +R+HD AEQ+A TLP+F+ HP V +++DS+ F FR FQDM+ RTR+L++MAQQL ++A+ +AVVL+NQ+TTKV GG S LVPALG+SWAHAAT+R + RFA L KSP TVP++V GIRD
Sbjct: 85 RGIVTFCEKVDRMLGGGIPARAITEFCGVPGVGKTQLGMQIAVDAQIPECMGGLQGEAVYIDTEGSFMMERLLDITDAVVDHVHNLGRRATSEECKT-QAERFSRESVLHGIHYFRVHDAAEQIAVTNTLPQFMDNHPKVCAIIVDSITFQFRQGFQDMAQRTRLLAQMAQQLMQLAESKGIAVVLINQVTTKVRQERTGGGGSRLVPALGDSWAHAATSRVILFWHEGQRFAHLHKSPSRPSTTVPYAVTAAGIRD 340 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig78.15361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig78.15361.1 >prot_C-linearis_contig78.15361.1 ID=prot_C-linearis_contig78.15361.1|Name=mRNA_C-linearis_contig78.15361.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=294bp MLGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDback to top mRNA from alignment at C-linearis_contig78:383979..387647- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig78.15361.1 ID=mRNA_C-linearis_contig78.15361.1|Name=mRNA_C-linearis_contig78.15361.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3669bp|location=Sequence derived from alignment at C-linearis_contig78:383979..387647- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig78:383979..387647- >mRNA_C-linearis_contig78.15361.1 ID=mRNA_C-linearis_contig78.15361.1|Name=mRNA_C-linearis_contig78.15361.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at C-linearis_contig78:383979..387647- (Chordaria linearis ClinC8C monoicous)back to top |