mRNA_C-linearis_contig75.15076.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig75.15076.1
Unique NamemRNA_C-linearis_contig75.15076.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig75.15076.1 vs. uniprot
Match: D7FQ91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ91_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.480e-89
Identity = 221/508 (43.50%), Postives = 271/508 (53.35%), Query Frame = 1 
Query:  286 RRTRAVPDAHALG---GGWTAAGRSSAPSFWPRYLDICLVATGVRCAALLDSRRAPRGSPSVAEVLDALQEQXXXXXXXXXXXXAKSGDGGDSTIGCSVACLGLLMLEGSLFLVNRALLLRRLECFFSAESTAGTSSWGVAGDTTETRGAXXXXXXXXXXXXASSGRTSEPAPPASGSAAVAEQQQHGRRRTFALVDVRKSLALPCERSDALAPRLNIALRSAFG----STVADGVDH---------PPPRGGASDIHGGSIAAETAAMGDRADRR-GEDG---------EGEGARWLRDWETKELGLDCEGLRETLGDVGLCGLAGWLLEYPVVYCCPS-QVGSPDGTDRAGEAGGGATTANAMGNCLAAVPLTVYSLSVDLGNK-KGSGSSFHVPHEIPSDTGTGTSLQAFSFSFPERVCGPAGAEAGEEGVTAG-----------------LQELVDDFLGRLEARIARHYSSSSSDGYSCERKKQVVFGLNVSKRTETLDRVAL 1674
            RR R  P A A+    G W+ AG S + +FWPR+ DICL A GVRCA LLDSRRAPR SP +A+VL ALQ               +            VACLGLL+LEGS FLVNR +L+RRL   FS E+        +A +  + R                SG  +E   PA   AA A Q+ H  RR  AL+DV  +LA+P +RSD LAPRL  AL  AFG    +  A+ V+          PPPRG + +    S A ET+A  +R DR  G DG         EG GARWLRDW  KEL LDCE L +TLGDVGL G+AGWLLEYP +YCC S   G+ +G+D       G    +A GNCLAAVPLTVYSL+VDLG+K +GS S      +  S + TG   +AFSFS PE +CGP   E  E+ V  G                 L  LVD+F+  ++ R+AR   S  +   S          LNVSKR  TLD+VAL
Sbjct:   25 RRVR--PRAAAVDSNDGDWSVAGGSRSQTFWPRFGDICLAAAGVRCAVLLDSRRAPRRSPPLADVLLALQHDQQERQQQKEHCATRDCHSDCDCNSGGVACLGLLVLEGSSFLVNRVMLVRRLNELFSGET--------IAAEPVDER--FRRSATCATDCDKKSGYGTEAVRPAVDGAASAHQR-HFDRRDLALLDVNMALAVPSDRSDVLAPRLYAALLWAFGGATVAATANSVEEGRARGPSPTPPPRGTSRE----STAMETSAKSNREDRFCGGDGVHRVPPSELEG-GARWLRDWSMKELVLDCESLVKTLGDVGLSGMAGWLLEYPAIYCCSSLNDGTTNGSD-------GKEMEHARGNCLAAVPLTVYSLAVDLGDKGRGSSSRPQPSLDERSASVTGAWFEAFSFSVPEAMCGPTETEQDEDEVNGGGACGENREERHRRTAAALHGLVDNFVQTIDRRLARLRRSGVNGNDS-------FLSLNVSKRRATLDQVAL 500
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BLAST of mRNA_C-linearis_contig75.15076.1 vs. uniprot
Match: A0A6H5LL79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL79_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 1.000e-85
Identity = 215/507 (42.41%), Postives = 268/507 (52.86%), Query Frame = 1 
Query:  289 RTRAVPDAHALG---GGWTAAGRSSAPSFWPRYLDICLVATGVRCAALLDSRRAPRGSPSVAEVLDALQEQXXXXXXXXXXXXAKSGDGGDSTIGCSVACLGLLMLEGSLFLVNRALLLRRLECFFSAESTAGTSSWGVAGDTTETRGAXXXXXXXXXXXXASSGRTSEPAPPASGSAAVAEQQQHGRRRTFALVDVRKSLALPCERSDALAPRLNIALRSAFG----STVADGVDH---------PPPRGGASDIHGGSIAAETAAMGDRADRR-GEDG---------EGEGARWLRDWETKELGLDCEGLRETLGDVGLCGLAGWLLEYPVVYCCPS-QVGSPDGTDRAGEAGGGATTANAMGNCLAAVPLTVYSLSVDLGNK-KGSGSSFHVPHEIPSDTGTGTSLQAFSFSFPERVCGPAGAEAGEEGVTAG-----------------LQELVDDFLGRLEARIARHYSSSSSDGYSCERKKQVVFGLNVSKRTETLDRVAL 1674
            +TR  P A A+    G W+ AG S + +FWPR+ D+CLVA GVRCA LLDSRRAPRG P +A+VL A+Q               +            VACLGLL+LEGS FLVNR +L+ RL   FS E+ A   +     D    R +              SG  +E   PA   AA A Q++ G R +  L+DV K+LA+P +RSD LAPRL  AL  AFG    +  A+ V+          PPPRG + +    S+A ET A  ++ DR  G DG         EG GARWLRD   KEL LDCE L +TLGDVGL GLAGWLLEYPV+YCC S   G+ +G+D       G    +A GNCLAAVPLTVYS +VDLG+K +G  S      +  S + TG    AFSFS PE +CGP   E  E+ V  G                 L  LVD+F+  ++ R+AR   S  +   S          LNV KR  TLD+VAL
Sbjct:   24 KTRVRPRAAAVDSNDGDWSVAGGSRSQTFWPRFGDVCLVAAGVRCAVLLDSRRAPRGFPPLADVLLAMQHDQQERQQQKERCATRDCHSDCDCSSGGVACLGLLVLEGSSFLVNRVMLVHRLNELFSGETIAAQQA-----DEMFRRSSTCATGCGKK-----SGYEAEAVRPAVDVAASAHQRRLGWRDST-LLDVNKALAVPSDRSDVLAPRLCAALLWAFGGATVAATANSVEGGRASRPSPTPPPRGTSRE----SMAMETPAKSNKEDRFCGGDGVHRVLPSELEG-GARWLRDLSMKELILDCESLVKTLGDVGLSGLAGWLLEYPVIYCCSSLNDGTSNGSD-------GKEMEHARGNCLAAVPLTVYSFAVDLGDKGRGCSSRSQPSLDERSVSATGAWFDAFSFSVPETMCGPTETEQDEDEVNGGGACGENREERHRRTAAALHGLVDNFVQTIDRRLARLRGSGDNGNGS-------FLSLNVFKRRATLDQVAL 500
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ91_ECTSI1.480e-8943.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LL79_9PHAE1.000e-8542.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig75contigC-linearis_contig75:88626..90911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007020.1
Exons2
Model size1966
Cds size1407
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig75.15076.1prot_C-linearis_contig75.15076.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig75 88896..90622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.0575805-UTR-C-linearis_contig75:88625..888951622930426.0575805-UTR-C-linearis_contig75:88625..88895Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 88626..88895 +
1690881063.4195328-UTR-C-linearis_contig75:88625..888951690881063.4195328-UTR-C-linearis_contig75:88625..88895Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 88626..88895 +
1622930426.1008952-UTR-C-linearis_contig75:90622..909111622930426.1008952-UTR-C-linearis_contig75:90622..90911Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 90623..90911 +
1690881063.4507082-UTR-C-linearis_contig75:90622..909111690881063.4507082-UTR-C-linearis_contig75:90622..90911Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 90623..90911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.073159-CDS-C-linearis_contig75:88895..889991622930426.073159-CDS-C-linearis_contig75:88895..88999Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 88896..88999 +
1690881063.4315865-CDS-C-linearis_contig75:88895..889991690881063.4315865-CDS-C-linearis_contig75:88895..88999Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 88896..88999 +
1622930426.0870502-CDS-C-linearis_contig75:89319..906221622930426.0870502-CDS-C-linearis_contig75:89319..90622Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 89320..90622 +
1690881063.4412034-CDS-C-linearis_contig75:89319..906221690881063.4412034-CDS-C-linearis_contig75:89319..90622Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 89320..90622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig75.15076.1

>prot_C-linearis_contig75.15076.1 ID=prot_C-linearis_contig75.15076.1|Name=mRNA_C-linearis_contig75.15076.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=469bp
MLVCARRTRAVPDAHALGGGWTAAGRSSAPSFWPRYLDICLVATGVRCAA
LLDSRRAPRGSPSVAEVLDALQEQEKKDQQQQQQQHAKSGDGGDSTIGCS
VACLGLLMLEGSLFLVNRALLLRRLECFFSAESTAGTSSWGVAGDTTETR
GAGAGAGAGAAAVGASSGRTSEPAPPASGSAAVAEQQQHGRRRTFALVDV
RKSLALPCERSDALAPRLNIALRSAFGSTVADGVDHPPPRGGASDIHGGS
IAAETAAMGDRADRRGEDGEGEGARWLRDWETKELGLDCEGLRETLGDVG
LCGLAGWLLEYPVVYCCPSQVGSPDGTDRAGEAGGGATTANAMGNCLAAV
PLTVYSLSVDLGNKKGSGSSFHVPHEIPSDTGTGTSLQAFSFSFPERVCG
PAGAEAGEEGVTAGLQELVDDFLGRLEARIARHYSSSSSDGYSCERKKQV
VFGLNVSKRTETLDRVAL*
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mRNA from alignment at C-linearis_contig75:88626..90911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig75.15076.1 ID=mRNA_C-linearis_contig75.15076.1|Name=mRNA_C-linearis_contig75.15076.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2286bp|location=Sequence derived from alignment at C-linearis_contig75:88626..90911+ (Chordaria linearis ClinC8C monoicous)
GCAAAGTCGCAAAATAATCACCTTCGCTTGGAATTGAACTCCAGACTTTG
CTGCTAGTGGGTTCCACTAGTCCACTGGGGCGACCGGCTAGATCTATGCA
TGTGACCAAAATTATCTTGCCGCCGTGACGTGAAGGCGCACGCAGGATAC
AGCAGTAGTAGCCACCTGACCACAACAGCAGTGCAAGTGATGCTGTCTCT
GCTCTACAAGCAAAAAATTCTACACCCGCAAGACTCTACCTTCTGCTTCG
CCCCGCCTGACTGTGTCTGAATGCTTGTGTGCGCTAGACGTACGAGAGCT
GTACCTGACGCTCATGCCTTGGGTGGGGGCTGGACTGCTGCTGGTCGATC
CAGTGCTCCGAGTTTTTGGCCACGGTGAGCTCTGTTGTTGTAGAATACAA
GCAATCGTATCAGGTCAATTTCCCCTTCATGATCATATTGCACGTTTTGT
TGTTTTTCGCACAATGATCGGCAGTTCAGAGCAAGAGTACAGCAGTGATC
GTCTTGTGTCTAGACTATCTAGACTTCGGGGTTGTGTATAAGAAGACTCC
TGTGGTGTGTTGGATGCCTCTGACATGCTCACGTCCGCGCCGTACTGTAC
CCTTACGGCGCACCCTCTCCTGACTCGTTCGACGAAAAATTGGCCACCCT
GTTGAACCCTTTGCATGGACCCCACCCCTTTTCCTCGGTTGCAGGTACTT
GGACATCTGCCTTGTCGCCACCGGCGTCCGCTGCGCCGCTCTCCTCGACA
GCCGGCGCGCACCCCGCGGATCTCCCTCTGTAGCGGAAGTTCTTGACGCA
CTACAAGAACAAGAAAAAAAAGACCAGCAGCAGCAGCAGCAGCAACACGC
AAAGAGCGGGGATGGCGGCGATTCCACCATCGGCTGCAGTGTCGCCTGTT
TGGGATTGCTCATGTTAGAAGGGTCATTGTTTCTGGTGAATCGTGCCCTG
CTCCTGCGCAGGCTGGAATGTTTTTTCTCGGCTGAATCCACCGCCGGCAC
AAGCAGTTGGGGCGTGGCAGGGGACACAACAGAGACACGCGGAGCAGGAG
CAGGAGCAGGAGCAGGAGCAGCGGCGGTTGGGGCGAGTTCAGGGCGGACA
AGCGAACCCGCTCCACCCGCTTCTGGTAGCGCTGCCGTGGCTGAACAGCA
ACAACACGGCCGGCGTCGAACCTTCGCTCTCGTTGACGTCCGAAAGTCCC
TGGCCTTGCCGTGTGAGCGCAGCGATGCTCTCGCCCCGAGGCTTAACATC
GCCCTCCGCTCTGCTTTCGGGAGCACCGTGGCTGATGGCGTAGACCACCC
ACCCCCACGTGGTGGGGCGTCCGACATCCATGGGGGGTCGATAGCAGCAG
AAACGGCGGCGATGGGAGATCGGGCGGATAGGCGCGGCGAAGACGGTGAA
GGAGAGGGAGCACGGTGGCTCCGCGACTGGGAAACAAAGGAGCTGGGGTT
GGACTGTGAGGGTCTCAGGGAGACTTTGGGCGATGTCGGTCTTTGCGGCT
TGGCCGGGTGGTTGCTCGAGTACCCCGTTGTTTACTGCTGCCCGTCTCAG
GTCGGGTCGCCCGATGGCACTGATCGCGCGGGCGAGGCTGGAGGAGGTGC
AACCACCGCGAACGCCATGGGCAACTGCTTGGCTGCCGTGCCCCTCACCG
TCTACTCACTGAGCGTTGATTTGGGCAACAAAAAGGGATCGGGAAGCTCT
TTTCACGTGCCGCATGAGATACCCTCGGATACTGGTACCGGCACGTCTTT
GCAGGCTTTCAGCTTCAGCTTTCCCGAGAGGGTTTGCGGCCCAGCCGGCG
CTGAGGCAGGCGAGGAAGGGGTCACTGCTGGCTTGCAGGAGCTGGTGGAC
GATTTTTTGGGGAGGTTGGAAGCTCGAATAGCACGGCATTACAGCAGTAG
CAGTAGTGATGGCTACTCCTGCGAGCGGAAGAAACAGGTGGTCTTCGGGT
TGAATGTTAGTAAGCGCACAGAGACGCTCGATCGAGTGGCACTGTAGTAG
CAGCGACTACAGTGGAGGCTTGGAATGTGGCTTCGTCGAGCATTTCTAAC
GCCGCAGTTGGTCACCTTGTTGCCCTTTTTGTATTTATCCCCAAAACATT
CCCTGACTCGAACCACTCTTACTCTTGTCAGCGCTGTCTTCCTTTCGTTG
GTTGTTTTCTCGAAGTACTTCCTATGTGCACCCCTTGCGCACAAATGTGC
CAGAATATGATCCACACCTGATCGCTGGGTAGCACTGTGTGTTTGCGAGG
CGCTTGGTACCTGTTATAAGTACCTTTACCTCCGTG
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Coding sequence (CDS) from alignment at C-linearis_contig75:88626..90911+

>mRNA_C-linearis_contig75.15076.1 ID=mRNA_C-linearis_contig75.15076.1|Name=mRNA_C-linearis_contig75.15076.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2814bp|location=Sequence derived from alignment at C-linearis_contig75:88626..90911+ (Chordaria linearis ClinC8C monoicous)
ATGCTTGTGTGCGCTAGACGTACGAGAGCTGTACCTGACGCTCATGCCTT
GGGTGGGGGCTGGACTGCTGCTGGTCGATCCAGTGCTCCGAGTTTTTGGC
CACGATGCTTGTGTGCGCTAGACGTACGAGAGCTGTACCTGACGCTCATG
CCTTGGGTGGGGGCTGGACTGCTGCTGGTCGATCCAGTGCTCCGAGTTTT
TGGCCACGGTACTTGGACATCTGCCTTGTCGCCACCGGCGTCCGCTGCGC
CGCTCTCCTCGACAGCCGGCGCGCACCCCGCGGATCTCCCTCTGTAGCGG
AAGTTCTTGACGCACTACAAGAACAAGAAAAAAAAGACCAGCAGCAGCAG
CAGCAGCAACACGCAAAGAGCGGGGATGGCGGCGATTCCACCATCGGCTG
CAGTGTCGCCTGTTTGGGATTGCTCATGTTAGAAGGGTCATTGTTTCTGG
TGAATCGTGCCCTGCTCCTGCGCAGGCTGGAATGTTTTTTCTCGGCTGAA
TCCACCGCCGGCACAAGCAGTTGGGGCGTGGCAGGGGACACAACAGAGAC
ACGCGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGCGGCGGTTGGGGCGA
GTTCAGGGCGGACAAGCGAACCCGCTCCACCCGCTTCTGGTAGCGCTGCC
GTGGCTGAACAGCAACAACACGGCCGGCGTCGAACCTTCGCTCTCGTTGA
CGTCCGAAAGTCCCTGGCCTTGCCGTGTGAGCGCAGCGATGCTCTCGCCC
CGAGGCTTAACATCGCCCTCCGCTCTGCTTTCGGGAGCACCGTGGCTGAT
GGCGTAGACCACCCACCCCCACGTGGTGGGGCGTCCGACATCCATGGGGG
GTCGATAGCAGCAGAAACGGCGGCGATGGGAGATCGGGCGGATAGGCGCG
GCGAAGACGGTGAAGGAGAGGGAGCACGGTGGCTCCGCGACTGGGAAACA
AAGGAGCTGGGGTTGGACTGTGAGGGTCTCAGGGAGACTTTGGGCGATGT
CGGTCTTTGCGGCTTGGCCGGGTGGTTGCTCGAGTACCCCGTTGTTTACT
GCTGCCCGTCTCAGGTCGGGTCGCCCGATGGCACTGATCGCGCGGGCGAG
GCTGGAGGAGGTGCAACCACCGCGAACGCCATGGGCAACTGCTTGGCTGC
CGTGCCCCTCACCGTCTACTCACTGAGCGTTGATTTGGGCAACAAAAAGG
GATCGGGAAGCTCTTTTCACGTGCCGCATGAGATACCCTCGGATACTGGT
ACCGGCACGTCTTTGCAGGCTTTCAGCTTCAGCTTTCCCGAGAGGGTTTG
CGGCCCAGCCGGCGCTGAGGCAGGCGAGGAAGGGGTCACTGCTGGCTTGC
AGGAGCTGGTGGACGATTTTTTGGGGAGGTTGGAAGCTCGAATAGCACGG
CATTACAGCAGTAGCAGTAGTGATGGCTACTCCTGCGAGCGGAAGAAACA
GGTGGTCTTCGGGTTGAATGTTAGTAAGCGCACAGAGACGCTCGATCGAG
TGGCACTGTAGGTACTTGGACATCTGCCTTGTCGCCACCGGCGTCCGCTG
CGCCGCTCTCCTCGACAGCCGGCGCGCACCCCGCGGATCTCCCTCTGTAG
CGGAAGTTCTTGACGCACTACAAGAACAAGAAAAAAAAGACCAGCAGCAG
CAGCAGCAGCAACACGCAAAGAGCGGGGATGGCGGCGATTCCACCATCGG
CTGCAGTGTCGCCTGTTTGGGATTGCTCATGTTAGAAGGGTCATTGTTTC
TGGTGAATCGTGCCCTGCTCCTGCGCAGGCTGGAATGTTTTTTCTCGGCT
GAATCCACCGCCGGCACAAGCAGTTGGGGCGTGGCAGGGGACACAACAGA
GACACGCGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGCGGCGGTTGGGG
CGAGTTCAGGGCGGACAAGCGAACCCGCTCCACCCGCTTCTGGTAGCGCT
GCCGTGGCTGAACAGCAACAACACGGCCGGCGTCGAACCTTCGCTCTCGT
TGACGTCCGAAAGTCCCTGGCCTTGCCGTGTGAGCGCAGCGATGCTCTCG
CCCCGAGGCTTAACATCGCCCTCCGCTCTGCTTTCGGGAGCACCGTGGCT
GATGGCGTAGACCACCCACCCCCACGTGGTGGGGCGTCCGACATCCATGG
GGGGTCGATAGCAGCAGAAACGGCGGCGATGGGAGATCGGGCGGATAGGC
GCGGCGAAGACGGTGAAGGAGAGGGAGCACGGTGGCTCCGCGACTGGGAA
ACAAAGGAGCTGGGGTTGGACTGTGAGGGTCTCAGGGAGACTTTGGGCGA
TGTCGGTCTTTGCGGCTTGGCCGGGTGGTTGCTCGAGTACCCCGTTGTTT
ACTGCTGCCCGTCTCAGGTCGGGTCGCCCGATGGCACTGATCGCGCGGGC
GAGGCTGGAGGAGGTGCAACCACCGCGAACGCCATGGGCAACTGCTTGGC
TGCCGTGCCCCTCACCGTCTACTCACTGAGCGTTGATTTGGGCAACAAAA
AGGGATCGGGAAGCTCTTTTCACGTGCCGCATGAGATACCCTCGGATACT
GGTACCGGCACGTCTTTGCAGGCTTTCAGCTTCAGCTTTCCCGAGAGGGT
TTGCGGCCCAGCCGGCGCTGAGGCAGGCGAGGAAGGGGTCACTGCTGGCT
TGCAGGAGCTGGTGGACGATTTTTTGGGGAGGTTGGAAGCTCGAATAGCA
CGGCATTACAGCAGTAGCAGTAGTGATGGCTACTCCTGCGAGCGGAAGAA
ACAGGTGGTCTTCGGGTTGAATGTTAGTAAGCGCACAGAGACGCTCGATC
GAGTGGCACTGTAG
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