mRNA_C-linearis_contig75.15064.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig75.15064.1
Unique NamemRNA_C-linearis_contig75.15064.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig75.15064.1 vs. uniprot
Match: D7FQ85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ85_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 4.920e-45
Identity = 136/309 (44.01%), Postives = 176/309 (56.96%), Query Frame = 2 
Query:  176 PPASIAVVADDDMCRQELSPLSTPEGL---------------------GESGVCKRHRKWCGPGE----------KIDAQGSSGDEASPHHIEDKDKATPLATA--------------VVRHRDMKQAKDEAQSVEGLAHDQTSVVA-----LTGRGG-LSGGGGEVTAASEQHKARDHQAKRLALEVARLRSTLRATTSELNTERSTRVRIEDEWWKKMGEWEQKRGSLVASKQEAERLSRSAEEEVEKVLAESKAREAKAALDGVAREDAQRKVDSVMTHVLKVQDRLVQALQAELTMTNRAREAAQ 949
            P A+ A+    DM RQE SPLS+PEGL                     G  G       + G G+          + DA G+  D+ +P  +    +A PLAT+              +     MK +   A + + +    T+V +     LT R G  S   G+ T ASE  K RD QAKRLALEVARLRS+LR TTSELNTERSTRVR+EDEWW++M EWE++RG LVASKQEAER +R+AEE+V ++L + K RE + A + +ARE  Q K D  M  V+KVQDRL+QAL+ EL MT+RAR+AAQ
Sbjct:  173 PRANDALRDASDMVRQEPSPLSSPEGLVAPPMWEEDKGVELGETIDVDGAHGARGSGSNYGGGGDTSCPRTPGDVRADASGAGDDDPAPQLLH-AGEAAPLATSKRPEVATCQQPEDRIHSTSGMKTSSAPAATTDNVKAAGTNVTSNEQDILTARSGNYSLERGDETWASEHQKTRD-QAKRLALEVARLRSSLRTTTSELNTERSTRVRLEDEWWRRMQEWEEERGRLVASKQEAERTARTAEEDVARLLVKEKDREGEVASERLARETRQEKADIAMNGVVKVQDRLIQALRTELEMTDRARQAAQ 479
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BLAST of mRNA_C-linearis_contig75.15064.1 vs. uniprot
Match: A0A6H5KFY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 7.830e-40
Identity = 132/309 (42.72%), Postives = 172/309 (55.66%), Query Frame = 2 
Query:  176 PPASIAVVADDDMCRQELSPLSTPEGL--------------GESGVCKRHRKWCGPGEKI-----------------DAQGSSGDEASPHHIEDKDKATPLAT-----AVVRHRD---------MKQAKDEAQSVEGLAHDQTSVVA-----LTGRGG-LSGGGGEVTAASEQHKARDHQAKRLALEVARLRSTLRATTSELNTERSTRVRIEDEWWKKMGEWEQKRGSLVASKQEAERLSRSAEEEVEKVLAESKAREAKAALDGVAREDAQRKVDSVMTHVLKVQDRLVQALQAELTMTNRAREAAQ 949
            P A+ A+    DM R E SPLS+PEGL              GE+       +  G G                    DA G+  D+ +P  + +  +A PLAT     A  R +          MK +   A + + +    T+V +     LT R G  S   G+ T ASE    RD QAKRLALEVARLRS+LRATTSELNTERSTRVR+EDEWW++M EWE+K G LVASKQEAER +R+AEE++ ++L + K RE + A + +A+E  Q K D  M  V+ VQDRL+QAL+ EL +T+ AR AAQ
Sbjct:  162 PRANDALRDAGDMFRHEPSPLSSPEGLVAPRMWEEIKGVELGETIDVDGAHEARGSGSNYGGGGDTSCPRTPGDVRGDASGAGDDDPAPQLL-NAGEAAPLATGKRPEAATRQQPEDRMHSTSGMKTSSAPAATTDDVEAAGTNVTSNEQHILTARSGNYSLEQGDETRASEHQNTRD-QAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKHGCLVASKQEAERAARTAEEDMARLLVKEKNREEEVASERLAQESRQEKADIAMKGVVTVQDRLIQALRTELELTDSARRAAQ 468
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig75.15064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ85_ECTSI4.920e-4544.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFY5_9PHAE7.830e-4042.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig75contigC-linearis_contig75:6868..8383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007070.1
Exons3
Model size1079
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig75.15064.1prot_C-linearis_contig75.15064.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig75 7016..8358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930423.7130094-UTR-C-linearis_contig75:6867..70151622930423.7130094-UTR-C-linearis_contig75:6867..7015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 6868..7015 +
1690881062.2687929-UTR-C-linearis_contig75:6867..70151690881062.2687929-UTR-C-linearis_contig75:6867..7015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 6868..7015 +
1622930423.7839646-UTR-C-linearis_contig75:8358..83831622930423.7839646-UTR-C-linearis_contig75:8358..8383Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 8359..8383 +
1690881062.3082573-UTR-C-linearis_contig75:8358..83831690881062.3082573-UTR-C-linearis_contig75:8358..8383Chordaria linearis ClinC8C monoicousUTRC-linearis_contig75 8359..8383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930423.7326307-CDS-C-linearis_contig75:7015..75281622930423.7326307-CDS-C-linearis_contig75:7015..7528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 7016..7528 +
1690881062.2796142-CDS-C-linearis_contig75:7015..75281690881062.2796142-CDS-C-linearis_contig75:7015..7528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 7016..7528 +
1622930423.756476-CDS-C-linearis_contig75:7736..78591622930423.756476-CDS-C-linearis_contig75:7736..7859Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 7737..7859 +
1690881062.2893972-CDS-C-linearis_contig75:7736..78591690881062.2893972-CDS-C-linearis_contig75:7736..7859Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 7737..7859 +
1622930423.7720604-CDS-C-linearis_contig75:8088..83581622930423.7720604-CDS-C-linearis_contig75:8088..8358Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 8089..8358 +
1690881062.2987907-CDS-C-linearis_contig75:8088..83581690881062.2987907-CDS-C-linearis_contig75:8088..8358Chordaria linearis ClinC8C monoicousCDSC-linearis_contig75 8089..8358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig75.15064.1

>prot_C-linearis_contig75.15064.1 ID=prot_C-linearis_contig75.15064.1|Name=mRNA_C-linearis_contig75.15064.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp
MCTAVTKGDPPASIAVVADDDMCRQELSPLSTPEGLGESGVCKRHRKWCG
PGEKIDAQGSSGDEASPHHIEDKDKATPLATAVVRHRDMKQAKDEAQSVE
GLAHDQTSVVALTGRGGLSGGGGEVTAASEQHKARDHQAKRLALEVARLR
STLRATTSELNTERSTRVRIEDEWWKKMGEWEQKRGSLVASKQEAERLSR
SAEEEVEKVLAESKAREAKAALDGVAREDAQRKVDSVMTHVLKVQDRLVQ
ALQAELTMTNRAREAAQVRTKISAVPSGSKTFARRGDLASSKMAIFFFWM
G*
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mRNA from alignment at C-linearis_contig75:6868..8383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig75.15064.1 ID=mRNA_C-linearis_contig75.15064.1|Name=mRNA_C-linearis_contig75.15064.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1516bp|location=Sequence derived from alignment at C-linearis_contig75:6868..8383+ (Chordaria linearis ClinC8C monoicous)
ATGCATGGGATGTCTTGCCCGGGGAGCGCGAGGTACCACATAGGCCTGCC
ACCGAGAAATAGTCAGCGTTGGCATTGTATTGGAAAGTGACTTCAATACA
GAAACAGCAGCGCCTTCTGGCTCCCCGCAGAATAGATCTAAAGCCGAGAT
GTGCACTGCTGTGACCAAGGGAGACCCGCCGGCGAGCATCGCTGTTGTCG
CTGATGACGATATGTGCAGGCAGGAACTTAGTCCTCTCTCAACACCGGAG
GGGCTCGGAGAATCGGGAGTGTGCAAACGACACAGGAAATGGTGCGGACC
GGGAGAGAAGATCGATGCTCAGGGATCATCAGGAGACGAGGCATCCCCTC
ATCATATTGAAGACAAAGACAAGGCGACGCCGCTGGCCACAGCTGTTGTT
CGTCACAGAGATATGAAACAGGCGAAGGATGAAGCTCAAAGTGTAGAAGG
ATTGGCGCACGATCAAACGAGCGTGGTGGCACTCACGGGCCGGGGCGGTC
TCTCCGGGGGCGGCGGCGAGGTAACGGCGGCGTCGGAGCAGCACAAGGCG
AGGGACCACCAGGCGAAGCGACTCGCCCTTGAAGTCGCACGTCTCCGTTC
AACTCTGCGTGCCACCACCTCGGAGCTGAACACGGAGAGATCTACACGCG
TACGAATAGAGGTGATAACTCATCAAGAAATTTGCTCCTCAGCCCGTATC
TACAGGCCGGGGGTGGCTTCAATATCGATCTCGTTTCTATGTTTCGATAG
ACGTTGAAGTGACGTCACTGGATCGCAGGATAAAACTCCTAACCAAGGTG
TGGTCAACTATATAAAATGTAAAGGCTTTTCTCGTTTCTCAGTATTTGAA
ATCCACTTTGTTCTCACAGGACGAGTGGTGGAAGAAGATGGGAGAATGGG
AGCAGAAACGTGGGAGCCTTGTCGCATCCAAGCAGGAAGCCGAGCGCCTA
TCAAGATCAGCCGAAGAAGAAGTGGAAAAAGTACTAGCAGAGGTATGCAT
GCACTCAATTGAACCAACCAACACTCAACCGTATTCCCCAAAAGCACATG
ACATGCGCTTTCGTTTTCCTGTTGCCATCCCAAAAGAATAAATATTTTTT
CCCTCGGTGTTCCTACCACCCCCCTTTCCCTTTCCCTTCACACCTCGTTT
TCGCCGTCTCTGGGTTGGCGACGTCTCCGGGCTCATCTGGGCGCTACGTT
TACTCGTAAAACGACTCAAAGAGCAAAGCTCGTGAGGCCAAGGCAGCGTT
GGACGGTGTTGCCCGAGAAGACGCCCAGCGCAAGGTGGACAGCGTAATGA
CACACGTTTTGAAGGTCCAGGATCGCCTCGTCCAGGCTTTGCAGGCAGAG
CTCACTATGACCAACAGAGCCAGGGAGGCGGCCCAGGTGCGGACAAAAAT
ATCAGCGGTTCCTTCGGGTTCGAAGACATTTGCTAGGCGCGGAGACTTGG
CAAGCAGCAAGATGGCGATATTTTTTTTTTGGATGGGTTGAAGAGGGTTG
CATCGATTGGTCGAGG
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Coding sequence (CDS) from alignment at C-linearis_contig75:6868..8383+

>mRNA_C-linearis_contig75.15064.1 ID=mRNA_C-linearis_contig75.15064.1|Name=mRNA_C-linearis_contig75.15064.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig75:6868..8383+ (Chordaria linearis ClinC8C monoicous)
ATGTGCACTGCTGTGACCAAGGGAGACCCGCCGGCGAGCATCGCTGTTGT
CGCTGATGACGATATGTGCAGGCAGGAACTTAGTCCTCTCTCAACACCGG
AGGGGCTCGGAGAATCGGGAGTGTGCAAACGACACAGGAAATGGTGCGGA
CCGGGAGAGAAGATCGATGCTCAGGGATCATCAGGAGACGAGGCATCCCC
TCATCATATTGAAGACAAAGACAAGGCGACGCCGCTGGCCACAGCTGTTG
TTCGTCACAGAGATATGAAACAGGCGAAGGATGAAGCTCAAAGTGTAGAA
GGATTGGCGCACGATCAAACGAGCGTGGTGGCACTCACGGGCCGGGGCGG
TCTCTCCGGGGGCGGCGGCGAGGTAACGGCGGCGTCGGAGCAGCACAAGG
CGAGGGACCACCAGGCGAAGCGACTCGCCCTTGAAGTCGCACGTCTCCGT
TCAACTCTGCGTGCCACCACCTCGGAGCTGAACACGGAGAGATCTACACG
CGTACGAATAGAGATGTGCACTGCTGTGACCAAGGGAGACCCGCCGGCGA
GCATCGCTGTTGTCGCTGATGACGATATGTGCAGGCAGGAACTTAGTCCT
CTCTCAACACCGGAGGGGCTCGGAGAATCGGGAGTGTGCAAACGACACAG
GAAATGGTGCGGACCGGGAGAGAAGATCGATGCTCAGGGATCATCAGGAG
ACGAGGCATCCCCTCATCATATTGAAGACAAAGACAAGGCGACGCCGCTG
GCCACAGCTGTTGTTCGTCACAGAGATATGAAACAGGCGAAGGATGAAGC
TCAAAGTGTAGAAGGATTGGCGCACGATCAAACGAGCGTGGTGGCACTCA
CGGGCCGGGGCGGTCTCTCCGGGGGCGGCGGCGAGGTAACGGCGGCGTCG
GAGCAGCACAAGGCGAGGGACCACCAGGCGAAGCGACTCGCCCTTGAAGT
CGCACGTCTCCGTTCAACTCTGCGTGCCACCACCTCGGAGCTGAACACGG
AGAGATCTACACGCGTACGAATAGAGGACGAGTGGTGGAAGAAGATGGGA
GAATGGGAGCAGAAACGTGGGAGCCTTGTCGCATCCAAGCAGGAAGCCGA
GCGCCTATCAAGATCAGCCGAAGAAGAAGTGGAAAAAGTACTAGCAGAGG
ACGAGTGGTGGAAGAAGATGGGAGAATGGGAGCAGAAACGTGGGAGCCTT
GTCGCATCCAAGCAGGAAGCCGAGCGCCTATCAAGATCAGCCGAAGAAGA
AGTGGAAAAAGTACTAGCAGAGAGCAAAGCTCGTGAGGCCAAGGCAGCGT
TGGACGGTGTTGCCCGAGAAGACGCCCAGCGCAAGGTGGACAGCGTAATG
ACACACGTTTTGAAGGTCCAGGATCGCCTCGTCCAGGCTTTGCAGGCAGA
GCTCACTATGACCAACAGAGCCAGGGAGGCGGCCCAGGTGCGGACAAAAA
TATCAGCGGTTCCTTCGGGTTCGAAGACATTTGCTAGGCGCGGAGACTTG
GCAAGCAGCAAGATGGCGATATTTTTTTTTTGGATGGGTTGAAGCAAAGC
TCGTGAGGCCAAGGCAGCGTTGGACGGTGTTGCCCGAGAAGACGCCCAGC
GCAAGGTGGACAGCGTAATGACACACGTTTTGAAGGTCCAGGATCGCCTC
GTCCAGGCTTTGCAGGCAGAGCTCACTATGACCAACAGAGCCAGGGAGGC
GGCCCAGGTGCGGACAAAAATATCAGCGGTTCCTTCGGGTTCGAAGACAT
TTGCTAGGCGCGGAGACTTGGCAAGCAGCAAGATGGCGATATTTTTTTTT
TGGATGGGTTGA
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