mRNA_C-linearis_contig73.14950.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig73.14950.1
Unique NamemRNA_C-linearis_contig73.14950.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig73.14950.1 vs. uniprot
Match: A0A6H5J6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M3_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 1.470e-82
Identity = 138/216 (63.89%), Postives = 153/216 (70.83%), Query Frame = 3 
Query:  144 ERSWGVHLVETAPAKLDSWRVIGDEADIAAYAAVHAPS-PATTXXXXXXXXXXXXGGDWSAMYFQLSPENAAGTLGYRWDRGYNVARLVRVSLPLAACGAVAMVLDDTGRGAEVGGGEEIGVHGKRRVLMAASDVPGAFKSALLKSRLGIPQDESLLPALGRRTPNPAVLVCRESAGEWEVAVPHQLLAVMSGNATWVEQRVTEFRPRAGVTAEMR 788
            E  W VH+VE  PA L  WRVIGDE+ +AAYAA  APS PATT              DWSAMYFQLSP NA GTLGYRWD+GY VARLVR+SLPL ACGAVA+V+DDTG   E G  E      K   LM +SD+PGAFK+A+LKSRLG+P DE LLPALGRR P P VLVCRES GEWEVAVPH LL VM+    W E+RV EFRP  G+TAE R
Sbjct:    9 ENPWDVHMVEATPATLHVWRVIGDESGVAAYAAARAPSVPATTES------------DWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLGACGAVALVVDDTGEKVEAGA-EFAKRENKLPGLMVSSDIPGAFKAAVLKSRLGVPSDEPLLPALGRRQP-PVVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPHTGITAEAR 210
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BLAST of mRNA_C-linearis_contig73.14950.1 vs. uniprot
Match: D7FX34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX34_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 9.010e-63
Identity = 107/155 (69.03%), Postives = 121/155 (78.06%), Query Frame = 3 
Query:  324 MYFQLSPENAAGTLGYRWDRGYNVARLVRVSLPLAACGAVAMVLDDTGRGAEVGGGEEIGVHGKRRVLMAASDVPGAFKSALLKSRLGIPQDESLLPALGRRTPNPAVLVCRESAGEWEVAVPHQLLAVMSGNATWVEQRVTEFRPRAGVTAEMR 788
            MYFQLSP NA GTLGYRWD+GY VARLVR+SLPLAACGAVA+V+DDTG   E G  E      K   LM +SD+PGAFK+A+LKSRLG+  D+ LLPALG+R P PAVLVCRES GEWEVAVPH LL VM+    W E+RV EFRPRAG+TAE R
Sbjct:    1 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVEAGA-ETAKREQKLPGLMVSSDIPGAFKAAVLKSRLGVLPDDPLLPALGQRQP-PAVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPRAGITAEAR 153
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BLAST of mRNA_C-linearis_contig73.14950.1 vs. uniprot
Match: A0A0G4I9W5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9W5_9ALVE)

HSP 1 Score: 88.6 bits (218), Expect = 5.430e-17
Identity = 74/226 (32.74%), Postives = 109/226 (48.23%), Query Frame = 3 
Query:  144 ERSWGVHLVETA-PAKLDSWRVIGDEADIAAY-AAVHAPSPATTXXXXXXXXXXXXGGDWSAMYFQLSPENAAGTLGYRWDRGYNVARLVRVSLP----LAACGAVAMVLDDTGRGAEVGGGEEIGVHGKRRVL-----MAASDVPGAFKSALLKSRLGIPQDESLLPALGRRTPNPAVLVCRESAGEWEVAVPHQLLAVMSGNATWVEQRVTEFRPRAGVTAEMR 788
            E S G+ +V    PA L  ++++G +  +  Y AAVH     +               DWSA+Y Q    +A GTL YRWD+G+++A L +++L       A GA A      G G   GG  E  V G + V+     MA   V G  K+ +LK  L +  +  L+  LG R     VL C+E+ G+WE+AVPH  ++    N   V++R  EF  + G+T   R
Sbjct:    9 EPSAGLEVVTVRLPASLSVFKIVGGKETVEEYLAAVHKARGGSETAKEP---------DWSALYLQFDEAHALGTLPYRWDQGFSLASLWKLTLKGKEESPAPGAAASA---GGEGKGTGGQVESTV-GLQAVIVKGGWMAGGSVAGEEKADILKKSLELNVELPLMAQLGSRG---MVLCCKETGGQWEMAVPHSCVSRFMSNT--VQRREKEFEEKCGMTRRWR 216
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig73.14950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J6M3_9PHAE1.470e-8263.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX34_ECTSI9.010e-6369.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4I9W5_9ALVE5.430e-1732.74Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig73contigC-linearis_contig73:298341..299307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size788
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig73.14950.1prot_C-linearis_contig73.14950.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig73 298341..299003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.9237707-CDS-C-linearis_contig73:298340..2990031622930400.9237707-CDS-C-linearis_contig73:298340..299003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 298341..299003 -
1690881050.5623162-CDS-C-linearis_contig73:298340..2990031690881050.5623162-CDS-C-linearis_contig73:298340..299003Chordaria linearis ClinC8C monoicousCDSC-linearis_contig73 298341..299003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930400.9409401-UTR-C-linearis_contig73:299003..2990181622930400.9409401-UTR-C-linearis_contig73:299003..299018Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 299004..299018 -
1690881050.5771408-UTR-C-linearis_contig73:299003..2990181690881050.5771408-UTR-C-linearis_contig73:299003..299018Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 299004..299018 -
1622930400.9566193-UTR-C-linearis_contig73:299197..2993071622930400.9566193-UTR-C-linearis_contig73:299197..299307Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 299198..299307 -
1690881050.5990877-UTR-C-linearis_contig73:299197..2993071690881050.5990877-UTR-C-linearis_contig73:299197..299307Chordaria linearis ClinC8C monoicousUTRC-linearis_contig73 299198..299307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig73.14950.1

>prot_C-linearis_contig73.14950.1 ID=prot_C-linearis_contig73.14950.1|Name=mRNA_C-linearis_contig73.14950.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=221bp
MEEDEEERSWGVHLVETAPAKLDSWRVIGDEADIAAYAAVHAPSPATTAA
AAAAAAAAAAGGDWSAMYFQLSPENAAGTLGYRWDRGYNVARLVRVSLPL
AACGAVAMVLDDTGRGAEVGGGEEIGVHGKRRVLMAASDVPGAFKSALLK
SRLGIPQDESLLPALGRRTPNPAVLVCRESAGEWEVAVPHQLLAVMSGNA
TWVEQRVTEFRPRAGVTAEMR
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mRNA from alignment at C-linearis_contig73:298341..299307-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig73.14950.1 ID=mRNA_C-linearis_contig73.14950.1|Name=mRNA_C-linearis_contig73.14950.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=967bp|location=Sequence derived from alignment at C-linearis_contig73:298341..299307- (Chordaria linearis ClinC8C monoicous)
CTTAATCTTTCTCGGCCACTACGCCCGCACGCCGCTACACAGACCATTAT
TTGTCTCGAGGGTGGTCAAGCTGCCTCTTTAGCACGGCACGCCAGCCGAG
CCAAAGAAAGGTATTGCATAAATTATTGCAAAGACCGGTCTCCACAGAGA
GAAAATGTAGACTACTGCTCCGACATACAGCAGCAGTAGACTCAATGCGT
GTTCAAAATGGATCGGGCTGGAGAAACACGGCCGTCCAACACCGCACACG
CTGACACTTGGTTCCCGCCAACACGTGTGTGCTCGGCAGATACATACGGG
GAACATGGAAGAAGATGAAGAAGAACGCTCCTGGGGGGTTCATCTCGTGG
AGACAGCGCCTGCCAAGCTAGACTCGTGGCGTGTTATCGGCGATGAGGCT
GATATTGCTGCCTACGCCGCCGTCCACGCCCCATCGCCGGCGACGACCGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGCGATTGGAGCG
CGATGTACTTTCAGTTGTCCCCAGAAAATGCCGCGGGCACCCTGGGCTAC
CGCTGGGATAGGGGCTACAACGTGGCACGCCTCGTGCGGGTCTCCCTTCC
GCTTGCCGCCTGCGGCGCCGTGGCCATGGTCTTGGACGACACGGGCAGGG
GGGCGGAGGTGGGCGGAGGGGAAGAGATCGGAGTTCATGGAAAGCGTCGG
GTTCTCATGGCGGCATCCGACGTGCCGGGTGCCTTCAAGTCGGCCCTGCT
CAAGTCCCGTTTGGGCATCCCTCAGGATGAGTCGCTCCTGCCGGCCCTGG
GAAGACGAACCCCTAACCCGGCGGTTCTCGTGTGCCGGGAGAGCGCGGGC
GAGTGGGAGGTGGCCGTACCCCATCAACTCTTGGCCGTTATGTCAGGCAA
CGCCACCTGGGTGGAGCAGCGTGTTACCGAGTTCAGGCCCCGCGCCGGCG
TCACCGCCGAGATGCGA
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Coding sequence (CDS) from alignment at C-linearis_contig73:298341..299307-

>mRNA_C-linearis_contig73.14950.1 ID=mRNA_C-linearis_contig73.14950.1|Name=mRNA_C-linearis_contig73.14950.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at C-linearis_contig73:298341..299307- (Chordaria linearis ClinC8C monoicous)
ATGGAAGAAGATGAAGAAGAACGCTCCTGGGGGGTTCATCTCGTGGAGAC
AGCGCCTGCCAAGCTAGACTCGTGGCGTGTTATCGGCGATGAGGCTGATA
TTGCTGCCTACGCCGCCGTCCACGCCCCATCGCCGGCGACGACCGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGCGATTGGAGCGCGAT
GTACTTTCAGTTGTCCCCAGAAAATGCCGCGGGCACCCTGGGCTACCGCT
GGGATAGGGGCTACAACGTGGCACGCCTCGTGCGGGTCTCCCTTCCGCTT
GCCGCCTGCGGCGCCGTGGCCATGGTCTTGGACGACACGGGCAGGGGGGC
GGAGGTGGGCGGAGGGGAAGAGATCGGAGTTCATGGAAAGCGTCGGGTTC
TCATGGCGGCATCCGACGTGCCGGGTGCCTTCAAGTCGGCCCTGCTCAAG
TCCCGTTTGGGCATCCCTCAGGATGAGTCGCTCCTGCCGGCCCTGGGAAG
ACGAACCCCTAACCCGGCGGTTCTCGTGTGCCGGGAGAGCGCGGGCGAGT
GGGAGGTGGCCGTACCCCATCAACTCTTGGCCGTTATGTCAGGCAACGCC
ACCTGGGTGGAGCAGCGTGTTACCGAGTTCAGGCCCCGCGCCGGCGTCAC
CGCCGAGATGCGAATGGAAGAAGATGAAGAAGAACGCTCCTGGGGGGTTC
ATCTCGTGGAGACAGCGCCTGCCAAGCTAGACTCGTGGCGTGTTATCGGC
GATGAGGCTGATATTGCTGCCTACGCCGCCGTCCACGCCCCATCGCCGGC
GACGACCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGCG
ATTGGAGCGCGATGTACTTTCAGTTGTCCCCAGAAAATGCCGCGGGCACC
CTGGGCTACCGCTGGGATAGGGGCTACAACGTGGCACGCCTCGTGCGGGT
CTCCCTTCCGCTTGCCGCCTGCGGCGCCGTGGCCATGGTCTTGGACGACA
CGGGCAGGGGGGCGGAGGTGGGCGGAGGGGAAGAGATCGGAGTTCATGGA
AAGCGTCGGGTTCTCATGGCGGCATCCGACGTGCCGGGTGCCTTCAAGTC
GGCCCTGCTCAAGTCCCGTTTGGGCATCCCTCAGGATGAGTCGCTCCTGC
CGGCCCTGGGAAGACGAACCCCTAACCCGGCGGTTCTCGTGTGCCGGGAG
AGCGCGGGCGAGTGGGAGGTGGCCGTACCCCATCAACTCTTGGCCGTTAT
GTCAGGCAACGCCACCTGGGTGGAGCAGCGTGTTACCGAGTTCAGGCCCC
GCGCCGGCGTCACCGCCGAGATGCGA
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