mRNA_C-linearis_contig111.1484.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig111.1484.1
Unique NamemRNA_C-linearis_contig111.1484.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Match: D7FL72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL72_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 7.380e-86
Identity = 132/147 (89.80%), Postives = 139/147 (94.56%), Query Frame = 1 
Query:  439 PSGPGAGVIDLKFENLKTGGFKVFLLLFLLGQGRAADNDTPFSVRDTPEGIRVLIGDEAKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEAKSTLASMAAL 879
            PSGPGAGVIDL+F+NLKTGGFKVFLL FLLGQGRA DNDTPFSVRDT EGIRVLIGDE KNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQ+V++H KLFMFREGEQNQLAE K+ LA MA+L
Sbjct:   23 PSGPGAGVIDLQFQNLKTGGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFMFREGEQNQLAETKAMLAGMASL 169
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BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Match: A0A835Z0B5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 6.400e-28
Identity = 63/145 (43.45%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:  448 PGAGVIDLKFENLKTGGFKVFLLLFLLGQGRAADNDTPFSVRDTPEGIRVLIGDEAKNDS--QWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEAKSTLASMAA 876
            PG  V+DL+F  LK GGFKV+L  +LL +G+  D    F+VR+T +GIR  +  E    S  ++ GVLD+SWG +P PFFRVDRID NE  PYPGEL +L +++DA+ ++  +       KLF F +  ++ +++AK+ L+++A+
Sbjct:   96 PGERVLDLRFATLKKGGFKVWLFFWLLAEGKG-DPKNQFTVRETADGIRCFLTGEQSGASVKEYNGVLDISWGTDPAPFFRVDRIDPNEEEPYPGELEVLCRIVDAMAELVQDDVTAGADKLFTF-DTSRSDVSDAKAKLSALAS 238
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BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Match: A0A7S3YKT4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKT4_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 1.490e-7
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  493 GGFKVFLLLFLLGQGRAADNDTPFSVRDTPEG-----IRVLIGDEAKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEA 849
            GG KV++ L+ L  G+ +D   PF V D  E      +R++I   ++ND    GVLD+++        RV R + +   PYPGELY +  LL+A++++   + V E  +LF   E + ++  EA
Sbjct:    1 GGLKVWMSLYFLSAGKRSDLQYPFQVTDISEAKGCPALRLVI---SENDDPI-GVLDVTFSENG---IRVTRYEDSRTTPYPGELYAMYYLLEAMLELKSSKDVKEGGQLFTDPENKLDEAFEA 117
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FL72_ECTSI7.380e-8689.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0B5_9STRA6.400e-2843.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3YKT4_HETAK1.490e-733.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:92625..95842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005260.1
Exons4
Model size1673
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1484.1prot_C-linearis_contig111.1484.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig111 92769..95051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.3012054-UTR-C-linearis_contig111:92624..927681622927481.3012054-UTR-C-linearis_contig111:92624..92768Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 92625..92768 +
1690879725.7003362-UTR-C-linearis_contig111:92624..927681690879725.7003362-UTR-C-linearis_contig111:92624..92768Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 92625..92768 +
1622927481.3559642-UTR-C-linearis_contig111:95051..958421622927481.3559642-UTR-C-linearis_contig111:95051..95842Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 95052..95842 +
1690879725.7595756-UTR-C-linearis_contig111:95051..958421690879725.7595756-UTR-C-linearis_contig111:95051..95842Chordaria linearis ClinC8C monoicousUTRC-linearis_contig111 95052..95842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.3136017-CDS-C-linearis_contig111:92768..931551622927481.3136017-CDS-C-linearis_contig111:92768..93155Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 92769..93155 +
1690879725.7118146-CDS-C-linearis_contig111:92768..931551690879725.7118146-CDS-C-linearis_contig111:92768..93155Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 92769..93155 +
1622927481.323524-CDS-C-linearis_contig111:93979..941571622927481.323524-CDS-C-linearis_contig111:93979..94157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 93980..94157 +
1690879725.724561-CDS-C-linearis_contig111:93979..941571690879725.724561-CDS-C-linearis_contig111:93979..94157Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 93980..94157 +
1622927481.3333752-CDS-C-linearis_contig111:94518..946221622927481.3333752-CDS-C-linearis_contig111:94518..94622Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 94519..94622 +
1690879725.7357426-CDS-C-linearis_contig111:94518..946221690879725.7357426-CDS-C-linearis_contig111:94518..94622Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 94519..94622 +
1622927481.3455918-CDS-C-linearis_contig111:94982..950511622927481.3455918-CDS-C-linearis_contig111:94982..95051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 94983..95051 +
1690879725.748688-CDS-C-linearis_contig111:94982..950511690879725.748688-CDS-C-linearis_contig111:94982..95051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig111 94983..95051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig111.1484.1

>prot_C-linearis_contig111.1484.1 ID=prot_C-linearis_contig111.1484.1|Name=mRNA_C-linearis_contig111.1484.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp
MRTKAVGALSCSAAGLLCCDAFVVSPPQQHVLASQQQQQLARLLATSASS
AASPPRPLLAQGPRESVGVRRARRVRNVSLLSMSSFDAAGDAAAARAAPS
GPGAGVIDLKFENLKTGGFKVFLLLFLLGQGRAADNDTPFSVRDTPEGIR
VLIGDEAKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILN
KLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEAKSTLASMAAL*
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mRNA from alignment at C-linearis_contig111:92625..95842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig111.1484.1 ID=mRNA_C-linearis_contig111.1484.1|Name=mRNA_C-linearis_contig111.1484.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3218bp|location=Sequence derived from alignment at C-linearis_contig111:92625..95842+ (Chordaria linearis ClinC8C monoicous)
GTTTCGTTTCCCAGTCATGCACGACTGAAGAGCACACCGTACACGCACAG
ACACACAACACACAGCCACCGGAAGAGAAAGGGCGCTCAGAAGAAGAAGA
AGAAGAAGAAGCATAACAACAGCAGGAAACAAGAAGCAGAAGAGATGAGG
ACGAAAGCCGTAGGAGCCTTGTCGTGTTCCGCAGCAGGGTTGCTCTGCTG
TGACGCCTTCGTTGTCTCACCGCCGCAGCAGCATGTTCTCGCGAGTCAGC
AGCAGCAGCAGCTCGCGAGGCTATTGGCCACATCGGCTTCTTCTGCTGCT
TCTCCCCCACGACCACTGCTGGCACAAGGACCAAGAGAAAGCGTCGGTGT
GCGGCGAGCTAGACGGGTCAGGAACGTGTCCTTGTTGTCCATGTCGTCCT
TCGACGCCGCGGGTGACGCAGCGGCCGCTCGCGCCGCGCCCTCGGGTCCC
GGCGCCGGTGTGATCGACCTCAAGTTCGAGAACTTGAAAACCGGAGGATT
CAAAGTCTTCTTGCTGCTCTTCTTGCTTGGTGTGAGTGTTTATTTGACCG
CAGTCTCGTATCATATGGTACTTTGTATCATGTGTTGCACGTATGCGACC
GATCTCAGCTGGCAGTGTTCGTTCGCATCAGATCTCCACGTAACATATGT
CATCCCCACCTCGCGCACGTACGGATCGACGACACAGACACCCACGCGTT
GCACCACCCCCTCGCGAGATGCGTGAGAAAAAAGCACAGATGGATATTCT
TGTGCTGAACGTGAAATAACTCTGGTAGTCGACACAGTGCAGCGACTGCT
TTCTTTGATGCTGCATCGGTGTGGTAGACCCAGATGGAGCGAAGCTGCGA
TCCAGACCGCCACTTGTTCTGGAAACAGGGTCCTCGTCAACCCGAGAGTC
ACGCAACACCAGGCCGTAGACGGTTCTTCAGGATCACGTTGTCGCCCGTT
TCAGTCAACGAGAACGTGATCGCGATAACGCTGGTGCTTGTTATTTCCGG
TGAACTGGGCCATGCATCGTCACGCACAGACTTTTTTTTCTGTCTGGCTA
GATCGGTGTTTGTTGCTTCTCCTCCCAACAGGGCAAGTTGGCCATCCCCT
GACGCCAGACAAACACACATATGGACTACTACGCGCGTGTGAGTCCAAGC
TCGCCATCGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCCAG
CACAATGCTGTCCTCGAGGTCACCATCAGCAAACAACGGCCCGACTCATC
ATATGTACGCTCTGCCCGTTGCATCCGTCGCATATTTCTTCTTCCTAACT
CCCGCCCCGCCCCGCCCCTCCTCTGGACCTCCTGCTGTCTACAAATACTC
CACAGCAAGGGAGAGCCGCAGATAACGACACGCCGTTCAGCGTGAGAGAT
ACCCCTGAGGGCATCCGGGTACTGATCGGGGACGAGGCCAAGAACGATTC
CCAGTGGGAAGGCGTCTTGGACCTTTCCTGGGGCGTGGAGCCGCGACCGT
TTTTCCGCGTCGACCGGATCGACGTGAACGAAGGTACATACATACCTACA
TAGACGAAATACGTGTGATACCAACGTGTGTTTGTTGCTGGGCGGTGTGG
CGCTGGGCGGTGGGGCGCTGGGCGGTGGGGGAGGGTGGGAAGAGGAGAGA
AGGTGTTGGGGAGGGTGTTGCTGGTGCCCAGGTGGACCATCTTGCTCTTG
CCGGGTGATGGCGACACGCTCTCTTGATCTGCTGGTTCGACGGGCTCTCC
TGCTGTCTGAATCTCGACCTTGTTTTTGTGCGGATGTACCTACGTATGCC
AACGGCAGCTTGCCCGTCGTTTGCAACCACCACACGGCATCGTGCTCCCA
CCATCCTAACCGCCGTGCTGTCCTGAACAAATTTTATCCGGTAGTGATCC
CGTACCCTGGAGAGCTTTACATCCTCAACAAGCTCCTGGACGCAATCATC
GACGTCAACGGGGAGCAAGCTGTGGACGAGCACTCAAAGCTCTTCATGGT
GAGTTTCCGCTCAAGCTTCCTTTTTGTTTTTTGCAAGAAAGAAACACACC
TATACATGAAGCACCTTCACTTGGTGCAGTTTATTATGCAGCCTTAACTC
GTTGTGCATGATGATTGGACTCCTGTATAGTCTTCTTCATGATACATACA
TCTGTACGTGTTTTGAGTTTATGTTGGCTACTGCTGTATCCATCTGTATG
TGCCTCTTGGCCAATCAAATTGCTTGCTGCTGTTGTACCGTTTCGCCGTC
CGAATTGTGGTTTCGTCCGGTCGCACTTTCTTTCCTTGCCTTACCTTACC
TTACCTTACCTTACCGTACCCTACATTACCTTGCATTACCGGGTTGCCGT
TGCGGCAGTTCCGCGAGGGGGAGCAAAACCAACTAGCGGAGGCGAAATCA
ACCCTGGCGAGCATGGCTGCTCTGTGATGAGCCATGAGTTGCAAGACCCG
CCTATCTCTTGCGGATGCACGCATGGTCCTGCTACGGTGGCTCCGGATGA
GCCGACGGGATGATGATGCTAAATGATACTGATATTGATCTGAGCTAATT
CCGAGGGTAGAGACTGCTGTATTTCGTGCCTTCGTGAAAAGGTGCTCTAG
ACTTTAAGGTCTCTGGCACATCGGTCACGCGGTGCTTGCCTCGCACACGA
TGCCTAGTCGTTCGCTGGAAGCTCGGTTTCGTTTCAACTAAATAGAGAGA
GGCCAGAAGAGGGAATGGAAACGACACGTACTCTTGTCTTGTGTCTCCCC
GTTTCGCGTAACTGGCGACTGCACCGTACCGTACCGTGTACCGCACCGCA
CCAGGCGTCTTGTTCCTGTTTTCGGCGCTCGACCCACCCTGCACGCTTTG
GATTTGAACAATCGTGGTGCTACAGCAGGATGGCGGGTTGCTTTCGTGGA
CTCGATGTGTTGTGTTGGAAATAGCGGTAGAGTCGGAGTCCCGACGAAAG
AGCAGTATAGACTAGATGAGTGACAAGCAAAGCTTCGGACGAGATTATGG
TCCTGCAATGCTCGTGGATGCCCCTCAAAACTTTTGCGCTCATGTTCGCC
ACACTTTTTGCCGGGGGTTTTGAAATGCCCCTAGAAATATGTGCTACTGC
TGTACCCGTAGCCGAGACAAAACAGTGTGGTCGCAGCGCTGCCGCTGCAT
TCTCCGCTAGGTTTCCGCGATAAGCCACTCGTATCTTTGCTGACGTGAGA
GAGACAACAACTGGTGCC
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Coding sequence (CDS) from alignment at C-linearis_contig111:92625..95842+

>mRNA_C-linearis_contig111.1484.1 ID=mRNA_C-linearis_contig111.1484.1|Name=mRNA_C-linearis_contig111.1484.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at C-linearis_contig111:92625..95842+ (Chordaria linearis ClinC8C monoicous)
ATGAGGACGAAAGCCGTAGGAGCCTTGTCGTGTTCCGCAGCAGGGTTGCT
CTGCTGTGACGCCTTCGTTGTCTCACCGCCGCAGCAGCATGTTCTCGCGA
GTCAGCAGCAGCAGCAGCTCGCGAGGCTATTGGCCACATCGGCTTCTTCT
GCTGCTTCTCCCCCACGACCACTGCTGGCACAAGGACCAAGAGAAAGCGT
CGGTGTGCGGCGAGCTAGACGGGTCAGGAACGTGTCCTTGTTGTCCATGT
CGTCCTTCGACGCCGCGGGTGACGCAGCGGCCGCTCGCGCCGCGCCCTCG
GGTCCCGGCGCCGGTGTGATCGACCTCAAGTTCGAGAACTTGAAAACCGG
AGGATTCAAAGTCTTCTTGCTGCTCTTCTTGCTTGGTATGAGGACGAAAG
CCGTAGGAGCCTTGTCGTGTTCCGCAGCAGGGTTGCTCTGCTGTGACGCC
TTCGTTGTCTCACCGCCGCAGCAGCATGTTCTCGCGAGTCAGCAGCAGCA
GCAGCTCGCGAGGCTATTGGCCACATCGGCTTCTTCTGCTGCTTCTCCCC
CACGACCACTGCTGGCACAAGGACCAAGAGAAAGCGTCGGTGTGCGGCGA
GCTAGACGGGTCAGGAACGTGTCCTTGTTGTCCATGTCGTCCTTCGACGC
CGCGGGTGACGCAGCGGCCGCTCGCGCCGCGCCCTCGGGTCCCGGCGCCG
GTGTGATCGACCTCAAGTTCGAGAACTTGAAAACCGGAGGATTCAAAGTC
TTCTTGCTGCTCTTCTTGCTTGGTCAAGGGAGAGCCGCAGATAACGACAC
GCCGTTCAGCGTGAGAGATACCCCTGAGGGCATCCGGGTACTGATCGGGG
ACGAGGCCAAGAACGATTCCCAGTGGGAAGGCGTCTTGGACCTTTCCTGG
GGCGTGGAGCCGCGACCGTTTTTCCGCGTCGACCGGATCGACGTGAACGA
AGCAAGGGAGAGCCGCAGATAACGACACGCCGTTCAGCGTGAGAGATACC
CCTGAGGGCATCCGGGTACTGATCGGGGACGAGGCCAAGAACGATTCCCA
GTGGGAAGGCGTCTTGGACCTTTCCTGGGGCGTGGAGCCGCGACCGTTTT
TCCGCGTCGACCGGATCGACGTGAACGAAGTGATCCCGTACCCTGGAGAG
CTTTACATCCTCAACAAGCTCCTGGACGCAATCATCGACGTCAACGGGGA
GCAAGCTGTGGACGAGCACTCAAAGCTCTTCATGTGATCCCGTACCCTGG
AGAGCTTTACATCCTCAACAAGCTCCTGGACGCAATCATCGACGTCAACG
GGGAGCAAGCTGTGGACGAGCACTCAAAGCTCTTCATGTTCCGCGAGGGG
GAGCAAAACCAACTAGCGGAGGCGAAATCAACCCTGGCGAGCATGGCTGC
TCTGTGATTCCGCGAGGGGGAGCAAAACCAACTAGCGGAGGCGAAATCAA
CCCTGGCGAGCATGGCTGCTCTGTGA
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