prot_C-linearis_contig111.1484.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig111.1484.1
Unique Nameprot_C-linearis_contig111.1484.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length246
Homology
[Close]
BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Match: D7FL72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL72_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 6.680e-90
Identity = 132/147 (89.80%), Postives = 139/147 (94.56%), Query Frame = 0 
Query:   99 PSGPGAGVIDLKFENLKTGGFKVFLLLFLLGQGRAADNDTPFSVRDTPEGIRVLIGDEAKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEAKSTLASMAAL 245
            PSGPGAGVIDL+F+NLKTGGFKVFLL FLLGQGRA DNDTPFSVRDT EGIRVLIGDE KNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQ+V++H KLFMFREGEQNQLAE K+ LA MA+L
Sbjct:   23 PSGPGAGVIDLQFQNLKTGGFKVFLLFFLLGQGRAKDNDTPFSVRDTEEGIRVLIGDETKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQSVEDHQKLFMFREGEQNQLAETKAMLAGMASL 169
[Close]
BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Match: A0A835Z0B5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0B5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.690e-30
Identity = 63/145 (43.45%), Postives = 96/145 (66.21%), Query Frame = 0 
Query:  102 PGAGVIDLKFENLKTGGFKVFLLLFLLGQGRAADNDTPFSVRDTPEGIRVLIGDEAKNDS--QWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEAKSTLASMAA 244
            PG  V+DL+F  LK GGFKV+L  +LL +G+  D    F+VR+T +GIR  +  E    S  ++ GVLD+SWG +P PFFRVDRID NE  PYPGEL +L +++DA+ ++  +       KLF F +  ++ +++AK+ L+++A+
Sbjct:   96 PGERVLDLRFATLKKGGFKVWLFFWLLAEGKG-DPKNQFTVRETADGIRCFLTGEQSGASVKEYNGVLDISWGTDPAPFFRVDRIDPNEEEPYPGELEVLCRIVDAMAELVQDDVTAGADKLFTF-DTSRSDVSDAKAKLSALAS 238
[Close]
BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Match: A0A7S3YKT4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKT4_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 5.690e-8
Identity = 41/124 (33.06%), Postives = 67/124 (54.03%), Query Frame = 0 
Query:  117 GGFKVFLLLFLLGQGRAADNDTPFSVRDTPEG-----IRVLIGDEAKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILNKLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEA 235
            GG KV++ L+ L  G+ +D   PF V D  E      +R++I   ++ND    GVLD+++        RV R + +   PYPGELY +  LL+A++++   + V E  +LF   E + ++  EA
Sbjct:    1 GGLKVWMSLYFLSAGKRSDLQYPFQVTDISEAKGCPALRLVI---SENDDPI-GVLDVTFSENG---IRVTRYEDSRTTPYPGELYAMYYLLEAMLELKSSKDVKEGGQLFTDPENKLDEAFEA 117
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig111.1484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FL72_ECTSI6.680e-9089.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0B5_9STRA5.690e-3043.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3YKT4_HETAK5.690e-833.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..245
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.556

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig111contigC-linearis_contig111:92769..95051 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig111.1484.1mRNA_C-linearis_contig111.1484.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig111 92625..95842 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig111.1484.1 ID=prot_C-linearis_contig111.1484.1|Name=mRNA_C-linearis_contig111.1484.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp
MRTKAVGALSCSAAGLLCCDAFVVSPPQQHVLASQQQQQLARLLATSASS
AASPPRPLLAQGPRESVGVRRARRVRNVSLLSMSSFDAAGDAAAARAAPS
GPGAGVIDLKFENLKTGGFKVFLLLFLLGQGRAADNDTPFSVRDTPEGIR
VLIGDEAKNDSQWEGVLDLSWGVEPRPFFRVDRIDVNEVIPYPGELYILN
KLLDAIIDVNGEQAVDEHSKLFMFREGEQNQLAEAKSTLASMAAL*
back to top