mRNA_C-linearis_contig110.1454.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig110.1454.1
Unique NamemRNA_C-linearis_contig110.1454.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 2.240e-115
Identity = 182/243 (74.90%), Postives = 204/243 (83.95%), Query Frame = 1 
Query:    1 VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPK------SFGFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEK---GAPGVEVLP 702
            V+DRLADDLLEG GF+AASKSL   Y+A+YF+ +RSYVSLA R +++ +G++  + DLG+IPK        GF   PPSAHYL D+WHK FYE PVVQ  GCSWTREEYLQ RAQL+DG  LAGDASFKYAKVIRLS GADGTRARPV+GIFTIMNEYDQVVFSKAM TASVHDLKNDLKMMFVKRFLGHGFKLPV+FY+DECC+DRQLLLTMFKEIE ETGARLY   E+   G+PGVEVLP
Sbjct:  143 VVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMW-PNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPVHGIFTIMNEYDQVVFSKAMTTASVHDLKNDLKMMFVKRFLGHGFKLPVIFYSDECCDDRQLLLTMFKEIELETGARLYDTAEEAGGGSPGVEVLP 384
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.690e-70
Identity = 131/222 (59.01%), Postives = 155/222 (69.82%), Query Frame = 1 
Query:   55 SKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPK------SFGFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEKGAPGVEVLP 702
            SKSL +AYN++YFS +RSYVSLAK+ I+K RG+YGQ ++  V PK        G+    PSAH+L D+W+KWFYE PVVQ+                             KYAKVIRL+TG DGTRA PVYGIFTIMNEYDQVVFSKAM+TASV+DLKND KM+FVK  +GHGF LPV+FY+D CCEDRQLLL MFKEIESE   RLY A  +GA  +E+LP
Sbjct:  297 SKSLAQAYNSRYFSQMRSYVSLAKKGISKYRGLYGQQSNPDV-PKFAGTGDPSGYNSSSPSAHHLADIWNKWFYETPVVQLVMLP------------------------SKYAKVIRLATGEDGTRALPVYGIFTIMNEYDQVVFSKAMSTASVYDLKNDPKMLFVKCVVGHGFTLPVIFYSDGCCEDRQLLLWMFKEIESENHVRLYDAAAEGA--IELLP 491
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: D7FVB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB4_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 6.710e-64
Identity = 113/243 (46.50%), Postives = 158/243 (65.02%), Query Frame = 1 
Query:    1 VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEKGAPGV--EVLP 702
            ++DRLADDL+ GKGFSAA+K++ +A+  K+      Y SL   R     GI+ + A+L   P+ FG       +    PS HYLRDVW  +F ++PV++V G SWT EEY     Q  DG +L GDASFK+AK+IRL   A   R+RPVYG+FT+ NEY+QVV+ + M T ++ +L  +LK+ F+ RF+ +GFK+P ++ TD+CC+DRQLL  +F+E E  T   LY+ DE  A GV  E+LP
Sbjct:    1 MVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVNSRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEVDGVSWTLEEYQHRLMQRWDGEVLGGDASFKFAKIIRLGARAGEERSRPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKLFFM-RFVRNGFKVPTLWNTDDCCDDRQLLQRVFREFEEATWISLYLEDEVDA-GVQLELLP 239
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 9.320e-61
Identity = 99/135 (73.33%), Postives = 113/135 (83.70%), Query Frame = 1 
Query:  196 GFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREE------YLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYT 582
            G  ++ PSAHYL D+WHKWFYE+P+V+    +W   +      YLQ RAQL+DGRLLAGDASFKYAKVIRL TG DGTRARPVYGIFTIMNEYDQVVFSKAM TASVHDLK+DLKMMFV+RF+GHGFKLPV+ +T
Sbjct:    6 GLNRRHPSAHYLGDIWHKWFYEMPMVK----TWVTTDALGHVNYLQRRAQLVDGRLLAGDASFKYAKVIRLPTGPDGTRARPVYGIFTIMNEYDQVVFSKAMKTASVHDLKSDLKMMFVQRFVGHGFKLPVILFT 136
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5K4A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A9_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.020e-55
Identity = 103/234 (44.02%), Postives = 145/234 (61.97%), Query Frame = 1 
Query:    1 VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEKGA 681
            ++ RLADDL+ GKGFSAA+K++ +A+  K+      Y SL   R     GI+ + A+L   P+ FG       +    PS HYLRDV   +F ++PV++V    WT EEY     Q  DG +L GDASFK+AK+IRL   A   R RPVYG FT+ NE +QVV+ + M T ++ +L  +LK++F+ RF+ + FK+P ++ T +CC+DRQLL  + +E E ETG RLY  DE  A
Sbjct:   68 MVGRLADDLVRGKGFSAAAKNILQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNECEQVVWQRLMKTGALSELAEELKLLFM-RFVRNDFKVPTLWNTHDCCDDRQLLQRILREFEEETGIRLYREDEVDA 298
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5JYR4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR4_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 9.210e-54
Identity = 93/122 (76.23%), Postives = 108/122 (88.52%), Query Frame = 1 
Query:  337 GRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEKGAPGVEVLP 702
            G +  GDASFKYAKVIRL+TG DGTRARPVY IFTIMNEY+QV+FSK M+TASV+DLKNDLKM+FVKRF+GHGFKLPV+FY+D+CCEDRQLLL+MFKEIESE   RLY A  +GA  +E+LP
Sbjct:   10 GHVKTGDASFKYAKVIRLATGEDGTRARPVYEIFTIMNEYNQVIFSKVMSTASVYDLKNDLKMLFVKRFVGHGFKLPVIFYSDDCCEDRQLLLSMFKEIESEDHVRLYDAAAEGA--IELLP 129
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 7.210e-50
Identity = 103/243 (42.39%), Postives = 140/243 (57.61%), Query Frame = 1 
Query:    1 VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEKGAPGV--EVLP 702
            +++RLADDL+ GK FSAA+K++ +A+  K+      Y SL   R     GI+ + A+L   P+ FG       +    PS HYLRDVW  +F ++PV++V    WT EEY     Q  DG +L GDASFK+AK+IRL   A   R RPVYG FT+ NEY+Q                     +F  RF+ +GFK+P ++ TD+CC+DRQLL  +F+E E  TG  LY+ DE  A GV  E+LP
Sbjct:  174 MVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIF-RSANLANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNEYEQ---------------------LFFMRFVRNGFKVPTLWNTDDCCDDRQLLQRIFREFEEVTGISLYLEDEVDA-GVQLELLP 392
[Close]
BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 7.260e-48
Identity = 107/269 (39.78%), Postives = 153/269 (56.88%), Query Frame = 1 
Query:    1 VLDRLADDLLEGKGFSAASKSLTKA--------------------------YNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEKGAPGV--EVLP 702
            ++DRLADDL+ GKGFSAA+K++ +                              K+      Y SL   R     GI+ + A+    P+ FG       +    PS HYLRDVW  ++ ++PV++V G  WT EEY     Q  DG +L+GDASFK+AK+IRL   A   R++PVYG+FT+ NEY+QVV+ + M T ++ +L  +LK  F  RF+ +GFK+  ++ TD+CC+DRQLL  +F+E E  TG  L++ DE  A GV  E+LP
Sbjct:  208 MVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRTSS-GIF-RSANHAKTPERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEVDGVGWTLEEYQHRLMQRWDGEVLSGDASFKFAKIIRLGARAGEERSKPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKPFF-NRFVRNGFKVFTLWNTDDCCDDRQLLQRVFREFEEATGISLHLEDEVDA-GVQLELLP 472
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BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 8.210e-42
Identity = 79/162 (48.77%), Postives = 105/162 (64.81%), Query Frame = 1 
Query:    1 VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQV 465
            ++DRLADDL+ GKGFSAA+K + +A+  K+ +    YVSLA  R + +  ++G       +P  FG       +    PS HYLRDVW  +F E+PV++V G  WTRE+YL    Q  DG +LAGDASFK+AK+IRL   A G R RPV+GIFT+ NEY+QV
Sbjct:   76 LVDRLADDLVHGKGFSAAAKYIRQAHTTKFMAFQLKYVSLADARRSSRVSLFGA----APVPVKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVKGVKWTREDYLHCVHQRWDGTVLAGDASFKFAKIIRLGATAHGERTRPVHGIFTVFNEYEQV 233
[Close]
BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Match: A0A6H5KYH3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH3_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.240e-41
Identity = 88/204 (43.14%), Postives = 124/204 (60.78%), Query Frame = 1 
Query:  118 LAKRRIAKQRGIYGQHADLGVIPKSFG-------FPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTREEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMNEYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCEDRQLLLTMFKEIESETGARLYVADEKGAPGV--EVLP 702
            L +    K  GI+ +  +L   P+ FG       +    PS HYLRDV   +F ++PV++V    WT EEY     Q  DG +L GDASFK+AK+IRL   A   R RPVYG FT+ +EY+QVV+ + M T ++ +L  +LK+ F+ RF+ +GFK+P ++ TD+CC+D QLL  + +E E  TG  LY+ DE  A GV  E+LP
Sbjct:    2 LLQAHTTKFMGIF-RSTNLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRLYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDASFKFAKIIRLRAKAGEERTRPVYGSFTVFDEYEQVVWQRPMKTGALSELAEELKLFFM-RFVRNGFKVPTLWNTDDCCDDLQLLQRILREFEEVTGISLYLEDEVDA-GVQLELLP 202
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig110.1454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIV2_ECTSI2.240e-11574.903'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4D4_9PHAE1.690e-7059.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVB4_ECTSI6.710e-6446.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCK3_9PHAE9.320e-6173.333'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4A9_9PHAE1.020e-5544.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYR4_9PHAE9.210e-5476.233'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KDX0_9PHAE7.210e-5042.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE7.260e-4839.783'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KE68_9PHAE8.210e-4248.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYH3_9PHAE1.240e-4143.143'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig110contigC-linearis_contig110:196927..198085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue2e-97
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons5
Model size702
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig110.1454.1prot_C-linearis_contig110.1454.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig110 196927..198085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.3963597-CDS-C-linearis_contig110:196926..1970451622927475.3963597-CDS-C-linearis_contig110:196926..197045Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 196927..197045 -
1690879723.0567813-CDS-C-linearis_contig110:196926..1970451690879723.0567813-CDS-C-linearis_contig110:196926..197045Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 196927..197045 -
1622927475.4127114-CDS-C-linearis_contig110:197175..1972961622927475.4127114-CDS-C-linearis_contig110:197175..197296Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197176..197296 -
1690879723.067526-CDS-C-linearis_contig110:197175..1972961690879723.067526-CDS-C-linearis_contig110:197175..197296Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197176..197296 -
1622927475.426936-CDS-C-linearis_contig110:197444..1976261622927475.426936-CDS-C-linearis_contig110:197444..197626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197445..197626 -
1690879723.08401-CDS-C-linearis_contig110:197444..1976261690879723.08401-CDS-C-linearis_contig110:197444..197626Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197445..197626 -
1622927475.4373078-CDS-C-linearis_contig110:197789..1978811622927475.4373078-CDS-C-linearis_contig110:197789..197881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197790..197881 -
1690879723.0954843-CDS-C-linearis_contig110:197789..1978811690879723.0954843-CDS-C-linearis_contig110:197789..197881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197790..197881 -
1622927475.4478498-CDS-C-linearis_contig110:197897..1980851622927475.4478498-CDS-C-linearis_contig110:197897..198085Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197898..198085 -
1690879723.1088674-CDS-C-linearis_contig110:197897..1980851690879723.1088674-CDS-C-linearis_contig110:197897..198085Chordaria linearis ClinC8C monoicousCDSC-linearis_contig110 197898..198085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig110.1454.1

>prot_C-linearis_contig110.1454.1 ID=prot_C-linearis_contig110.1454.1|Name=mRNA_C-linearis_contig110.1454.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=234bp
VLDRLADDLLEGKGFSAASKSLTKAYNAKYFSHVRSYVSLAKRRIAKQRG
IYGQHADLGVIPKSFGFPQQPPSAHYLRDVWHKWFYEIPVVQVYGCSWTR
EEYLQMRAQLIDGRLLAGDASFKYAKVIRLSTGADGTRARPVYGIFTIMN
EYDQVVFSKAMATASVHDLKNDLKMMFVKRFLGHGFKLPVMFYTDECCED
RQLLLTMFKEIESETGARLYVADEKGAPGVEVLP
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mRNA from alignment at C-linearis_contig110:196927..198085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig110.1454.1 ID=mRNA_C-linearis_contig110.1454.1|Name=mRNA_C-linearis_contig110.1454.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1159bp|location=Sequence derived from alignment at C-linearis_contig110:196927..198085- (Chordaria linearis ClinC8C monoicous)
GTACTTGACCGCTTAGCGGACGACCTTCTTGAGGGCAAGGGTTTTTCGGC
GGCTTCAAAATCGCTTACGAAGGCGTACAATGCCAAGTATTTCAGTCACG
TCCGGTCGTACGTGTCGCTAGCCAAACGCCGCATTGCTAAGCAGAGGGGG
ATTTATGGGCAACATGCGGACCTCGGCGTGATCCCAAAGTTCTCCCCATA
GGAGATCCTTTGGGTTTCCACAGCAGCCCCCTTCGGCTCACTACCTGAGG
GACGTTTGGCACAAGTGGTTCTACGAAATCCCGGTTGTGCAGGTATGTGC
ATGAAGGACACGAAAGGGTGTGGGTTTTCAGAATGTTGTACTACTCAGGC
AAGCAAAGAGAACAACATTTCGCAACCGTATGTGTAACCCTGTAATCGAC
CTTGGCCCGGTTTGCTTCATATTTTCTCTTTCCTCTGGACCATAAAAATG
ACCAGGAAGACGGGTGCTCCTGGACACGTGAAGAGTATCTTCAGATGCGA
GCTCAGCTGATAGATGGTCGTTTGCTAGCGGGAGATGCCTCTTTCAAGTA
TGCCAAGGTCATCCGGTTATCTACTGGCGCAGACGGGACCCGCGCACGGC
CCGTGTACGGAATTTTTACCATCATGAACGAGTACGACCAGGTGAGGAAA
CCATGCTGTTAAAAGCTGCTTGCTGGTTGTTTGCGCCGTGTTTTGTACAC
GCACCGCATCACATGCTCGTACAGGCCTCGTTTGTCAAACTCGTGGAAGG
CGTCAAAATAAATATCCTCCCACGCGTTCATTCTCACAGGTTGTGTTTTC
GAAGGCCATGGCCACTGCATCGGTGCACGACCTGAAGAACGACTTGAAGA
TGATGTTCGTCAAACGTTTCCTCGGCCATGGTTTCAAGCTCCCGGTCATG
TTCTACACCGGTGCGTTGAATTATTGTCGGGTGCCTTGGGTAAAGGTCAC
CTTTCCTTCCGAGTGTATTTGATGAGGTTAGTGGAATTTTATCGAATAAG
ACGGATGCTTAACACCGTTTCATTTGAATTTCTTGCCCAGATGAATGCTG
CGAGGATCGACAACTGCTGCTTACGATGTTCAAGGAGATAGAGTCGGAGA
CTGGTGCGCGTTTGTACGTCGCAGATGAAAAGGGTGCTCCAGGGGTTGAA
GTATTGCCC
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Coding sequence (CDS) from alignment at C-linearis_contig110:196927..198085-

>mRNA_C-linearis_contig110.1454.1 ID=mRNA_C-linearis_contig110.1454.1|Name=mRNA_C-linearis_contig110.1454.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at C-linearis_contig110:196927..198085- (Chordaria linearis ClinC8C monoicous)
GTACTTGACCGCTTAGCGGACGACCTTCTTGAGGGCAAGGGTTTTTCGGC
GGCTTCAAAATCGCTTACGAAGGCGTACAATGCCAAGTATTTCAGTCACG
TCCGGTCGTACGTGTCGCTAGCCAAACGCCGCATTGCTAAGCAGAGGGGG
ATTTATGGGCAACATGCGGACCTCGGCGTGATCCCAAAGTACTTGACCGC
TTAGCGGACGACCTTCTTGAGGGCAAGGGTTTTTCGGCGGCTTCAAAATC
GCTTACGAAGGCGTACAATGCCAAGTATTTCAGTCACGTCCGGTCGTACG
TGTCGCTAGCCAAACGCCGCATTGCTAAGCAGAGGGGGATTTATGGGCAA
CATGCGGACCTCGGCGTGATCCCAAAATCCTTTGGGTTTCCACAGCAGCC
CCCTTCGGCTCACTACCTGAGGGACGTTTGGCACAAGTGGTTCTACGAAA
TCCCGGTTGTGCAGGTATATCCTTTGGGTTTCCACAGCAGCCCCCTTCGG
CTCACTACCTGAGGGACGTTTGGCACAAGTGGTTCTACGAAATCCCGGTT
GTGCAGGTATACGGGTGCTCCTGGACACGTGAAGAGTATCTTCAGATGCG
AGCTCAGCTGATAGATGGTCGTTTGCTAGCGGGAGATGCCTCTTTCAAGT
ATGCCAAGGTCATCCGGTTATCTACTGGCGCAGACGGGACCCGCGCACGG
CCCGTGTACGGAATTTTTACCATCATGAACGAGTACGACCAGACGGGTGC
TCCTGGACACGTGAAGAGTATCTTCAGATGCGAGCTCAGCTGATAGATGG
TCGTTTGCTAGCGGGAGATGCCTCTTTCAAGTATGCCAAGGTCATCCGGT
TATCTACTGGCGCAGACGGGACCCGCGCACGGCCCGTGTACGGAATTTTT
ACCATCATGAACGAGTACGACCAGGTTGTGTTTTCGAAGGCCATGGCCAC
TGCATCGGTGCACGACCTGAAGAACGACTTGAAGATGATGTTCGTCAAAC
GTTTCCTCGGCCATGGTTTCAAGCTCCCGGTCATGTTCTACACCGGTTGT
GTTTTCGAAGGCCATGGCCACTGCATCGGTGCACGACCTGAAGAACGACT
TGAAGATGATGTTCGTCAAACGTTTCCTCGGCCATGGTTTCAAGCTCCCG
GTCATGTTCTACACCGATGAATGCTGCGAGGATCGACAACTGCTGCTTAC
GATGTTCAAGGAGATAGAGTCGGAGACTGGTGCGCGTTTGTACGTCGCAG
ATGAAAAGGGTGCTCCAGGGGTTGAAGTATTGCCCATGAATGCTGCGAGG
ATCGACAACTGCTGCTTACGATGTTCAAGGAGATAGAGTCGGAGACTGGT
GCGCGTTTGTACGTCGCAGATGAAAAGGGTGCTCCAGGGGTTGAAGTATT
GCCC
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