mRNA_C-linearis_contig11.1293.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig11.1293.1
Unique NamemRNA_C-linearis_contig11.1293.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: D8LMZ4_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ4_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.510e-34
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:   91 MVIARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFELP 321
            MVIARSLKDAARLGS TTSLLLRRSEDL+CQNLMCAK+G ACVCRLAVHLSRL  L++LD+AEN LGVLPEPVFELP
Sbjct:    1 MVIARSLKDAARLGSATTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELP 77
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BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: A0A1V9ZV51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV51_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.820e-15
Identity = 38/75 (50.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   94 VIARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFEL 318
            +IA+SL+DAA   S    L+LR+S+DL+C+NLMC ++G ACVC+L++ L RL  L +LD++EN L +LP  +F+L
Sbjct:    1 MIAKSLRDAATHTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQL 75
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BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: A0A836CFY3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.800e-15
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:   94 VIARSLKDAARLGSV--TTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFE 315
            ++A SL +A+ +       SL+LR SEDL+C+N+MC KLGGAC+CRLAV L R   L+ LD+A+NGL  LPE V E
Sbjct:    9 LVAASLAEASSMAPQGGPVSLVLRSSEDLLCRNIMCEKLGGACLCRLAVCLGRCSGLQSLDLAKNGLATLPEAVLE 84
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BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: T0QH27_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH27_SAPDV)

HSP 1 Score: 80.5 bits (197), Expect = 1.430e-14
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   94 VIARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFEL 318
            +IA+SL+DAA   S    L+LR+SEDL+C NLMC ++G ACVC+L+V L RL  L  LD++ N L  LP  +F L
Sbjct:    1 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSL 75
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BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: F0WI42_9STRA (Uncharacterized protein AlNc14C107G6249 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WI42_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.100e-13
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   97 IARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFEL 318
            +A S +D A+ G+    L+L++S+DL+C+NLMC K+GGAC CRLA  L+ +  L  LD++ N L  +PE VF L
Sbjct:    5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGL 78
[Close]
BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: A0A485L6B7_9STRA (Aste57867_16664 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6B7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.720e-13
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   94 VIARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFELP 321
            +I RS++DAA        LLLRRSEDL+C+NLMC ++G AC+CR ++ L +L  L KLD++ N L  LP  +F+LP
Sbjct:  332 MIVRSVRDAAMHMGAVKELLLRRSEDLLCRNLMCERVGEACICRFSLVLEKLPQLTKLDVSHNNLHALPPALFQLP 407
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BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: A0A1V9Z9Y8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9Y8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.930e-13
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   94 VIARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFEL 318
            +IA+SL++AA   +    LLLR+SEDL+C+NLMC ++G ACVC+L++ L RL  L  LD++ N LG LP  V  L
Sbjct:    1 MIAKSLREAATHTTAVRKLLLRKSEDLVCRNLMCERVGEACVCKLSLVLERLPELTHLDVSGNKLGALPPAVAAL 75
[Close]
BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: A0A024GQG6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQG6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.210e-13
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   97 IARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFEL 318
            +A S + AA+ G+ T  L+L +S+DL+C+NLMC ++GGAC CRLA  L+ +  L  LD++ N L  +P+ VF L
Sbjct:    5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSL 78
[Close]
BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: A0A067CF62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CF62_SAPPC)

HSP 1 Score: 80.1 bits (196), Expect = 9.860e-13
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   94 VIARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFEL 318
            +IA+SL+DAA   S    L+LR+SEDL+C NLMC ++G ACVC+L+V L RL  L  LD++ N L  LP  +F L
Sbjct:  382 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLMSLPPAIFSL 456
[Close]
BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Match: A0A6G0X207_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X207_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.050e-12
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   94 VIARSLKDAARLGSVTTSLLLRRSEDLMCQNLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFEL 318
            +I RS+++AA        L+LR+SEDL+C+NLMC ++G AC+CRL++ L +L NL  LD++ N L  LP  VF+L
Sbjct:  291 MIVRSVREAAMHMGAVRELILRQSEDLLCRNLMCERVGDACMCRLSIVLEKLPNLTTLDVSANRLPALPPSVFQL 365
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig11.1293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LMZ4_ECTSI1.510e-3487.01Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A1V9ZV51_9STRA6.820e-1550.67Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A836CFY3_9STRA7.800e-1553.95Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
T0QH27_SAPDV1.430e-1452.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
F0WI42_9STRA2.100e-1347.30Uncharacterized protein AlNc14C107G6249 n=1 Tax=Al... [more]
A0A485L6B7_9STRA2.720e-1350.00Aste57867_16664 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z9Y8_9STRA2.930e-1350.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024GQG6_9STRA5.210e-1345.95Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A067CF62_SAPPC9.860e-1352.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6G0X207_9STRA6.050e-1248.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig11contigC-linearis_contig11:2320200..2322225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue9.5e-29
Seed eggNOG ortholog2880.D8LMZ4
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_001180.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1104
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig11.1293.1prot_C-linearis_contig11.1293.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig11 2320695..2322192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927453.7024271-UTR-C-linearis_contig11:2320199..23206941622927453.7024271-UTR-C-linearis_contig11:2320199..2320694Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2320200..2320694 -
1690879709.8384864-UTR-C-linearis_contig11:2320199..23206941690879709.8384864-UTR-C-linearis_contig11:2320199..2320694Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2320200..2320694 -
1622927453.758111-UTR-C-linearis_contig11:2322192..23222251622927453.758111-UTR-C-linearis_contig11:2322192..2322225Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2322193..2322225 -
1690879709.8872018-UTR-C-linearis_contig11:2322192..23222251690879709.8872018-UTR-C-linearis_contig11:2322192..2322225Chordaria linearis ClinC8C monoicousUTRC-linearis_contig11 2322193..2322225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927453.7171712-CDS-C-linearis_contig11:2320694..23209571622927453.7171712-CDS-C-linearis_contig11:2320694..2320957Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2320695..2320957 -
1690879709.849507-CDS-C-linearis_contig11:2320694..23209571690879709.849507-CDS-C-linearis_contig11:2320694..2320957Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2320695..2320957 -
1622927453.7287815-CDS-C-linearis_contig11:2321464..23217441622927453.7287815-CDS-C-linearis_contig11:2321464..2321744Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2321465..2321744 -
1690879709.860803-CDS-C-linearis_contig11:2321464..23217441690879709.860803-CDS-C-linearis_contig11:2321464..2321744Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2321465..2321744 -
1622927453.743427-CDS-C-linearis_contig11:2322159..23221921622927453.743427-CDS-C-linearis_contig11:2322159..2322192Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2322160..2322192 -
1690879709.874441-CDS-C-linearis_contig11:2322159..23221921690879709.874441-CDS-C-linearis_contig11:2322159..2322192Chordaria linearis ClinC8C monoicousCDSC-linearis_contig11 2322160..2322192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig11.1293.1

>prot_C-linearis_contig11.1293.1 ID=prot_C-linearis_contig11.1293.1|Name=mRNA_C-linearis_contig11.1293.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=192bp
MPALATNLSNRCLISSFSTMVIARSLKDAARLGSVTTSLLLRRSEDLMCQ
NLMCAKLGGACVCRLAVHLSRLRNLRKLDIAENGLGVLPEPVFELPNLEH
LDVSGNGLKDLSASIGALSSLRTLRVSGNALAALPKETASLPLLTEVHVG
GDSGLDQEGVKDVLRQRPDISVVWDDNGKKAEKNGANTCAR*
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mRNA from alignment at C-linearis_contig11:2320200..2322225-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig11.1293.1 ID=mRNA_C-linearis_contig11.1293.1|Name=mRNA_C-linearis_contig11.1293.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2026bp|location=Sequence derived from alignment at C-linearis_contig11:2320200..2322225- (Chordaria linearis ClinC8C monoicous)
GTTTGATACCTCCAGCACGCTGATCCTGGGTTGATGCCTGCTCTCGCCAC
GAACCTCTCTAATCGGGTATGTGTTGCCCATGCATCATGTGTGCCAGCGT
GCCTGCGTTCGTACAGCTGTAGGCCTGCTCTCAGCGGTCTGGTTGCCTCT
TTCGTTCCCCGAGAAGGTACCCGTGCGCCGCCTGTTGTCTGCGTGCCTCC
TACCTAATATGACAGGTTATGCAAGTGGGCTGTCTCCGCGTACGTTGCTA
TGCAGCCGTGATATGAGCTATAACTATTCTACAGAGTGCCGCTGAATTTT
TGTGTTCATACACAGGTTGATTTGCTTGAAATATGTTTGCGTTCGTGTTC
CTCCTACAGAGTACATTCAGCAGGACCTACATAAGGATCGGAGGCTACGC
CGTTCGTTGAACACGCACAAACGTTGCCCCATCCAATGATAGCCCCACCC
TACCCACCGTGAACATGTTCGCCACTGCTAGTGCTTGATTTCTAGTTTCT
CGACCATGGTGATCGCACGAAGCCTCAAGGATGCGGCACGACTAGGGAGC
GTCACGACCTCGCTGCTGCTCCGGAGGAGCGAAGACTTGATGTGCCAGAA
CCTCATGTGCGCGAAGCTCGGCGGCGCCTGCGTTTGCCGGCTGGCTGTCC
ACTTGTCGAGACTAAGGAATCTGAGAAAGCTCGATATTGCCGAAAACGGA
CTTGGCGTCCTGCCGGAACCGGTGTTCGAGCTGCCCAACTTGGAGCACCT
GGACGTTAGCGGTGAGTGGCTTGGTCAGCGGCGGCTGCGGCGGTGGCGGC
GGTGCAGGGAGGCGGTACTCATGATGAGGCGTGCCGTCAACTTCAAGCCA
TCGGCCTCACACCCCTACAAAGCCGGGGTCGATCCTATCGATCTTTCGCC
CGCCGGGCTCGCAAAGTTCTACGCACGAAGTGCCGTGGGGGCGAGTCGTA
TTGGAGTTTCACCAGTAGCAGCAGCAGTACTGCTGTCCCTCCGTCGACGC
ATAATCTCATGCTGTCGCACCGTCGGCCGTTCGCCAAAGCTTGGGCAGCA
CCTGGCAGCAGCAGATGTTTGCTAGTAGCACTTCTACTGTGCTTCTCCAT
GGAAAGGTCTGAAGTCGATTTAGTTTGGTCGATGTGTGGTTTGGTGCTAA
CTCCGTGGCTTTGCATCCCGTGGCGACGCTGCTTCTTGCCATATCGATGG
GCAGCTTGGTTTAATCCAACTCAGTGCCAGGGTTCGCTGCATGCTTCCAA
TCGTCCATCTCTTTACAGGAAACGGCCTCAAGGATCTATCGGCAAGCATT
GGCGCCCTCTCGAGCCTGCGTACTCTCAGAGTATCCGGCAATGCCCTCGC
GGCTCTGCCCAAGGAGACGGCCTCGTTGCCGCTACTGACAGAAGTCCACG
TGGGCGGCGACAGCGGACTAGACCAGGAGGGTGTGAAAGACGTGTTGCGC
CAGAGACCAGATATCTCCGTTGTGTGGGACGACAACGGAAAGAAAGCTGA
AAAAAATGGCGCAAATACCTGCGCAAGATAGCGACTGGGGAATGCGGTTG
AACCCATAGAAGGGAGCGGCATGTATGTGCAATGTAAAAGTCGATGGAGA
TTCAAAGTAGCTCGCAATTTGTGAGGACGGTTTTTTATCATCTCCGTCTG
CTGTCTTTTGTCTTTTGGGGATTTAGTGTGGGCAACTGCTTTTTCCTACC
TTGCGCGCCCCTCCGGCCATGCTACTGTATCGCACTCAGGCTCACCATCC
CACTTTACGAAAAAGCAAAGCACTCTTGGGGCACAACACCTCGTCTGCAA
CCTCTACTTTGTACTGTTGCACGTGTGGAAGTGTCCAACTTACCACCTAT
TTCGGGGCGTTCCCTGCTGCGTGTTTTTTTTGTTGAAGGCCAGCTCTCAG
GTGGGCACGTAGGTTTGCCAGTGCCCTAAGACTGAATCATTCACGATGCT
GCTGATGGAAACATCCCATGTAACCAACAACAGTTCGCCCCGGGAAAAAA
AAACGGCAGCAATTTAAACACATCGA
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Coding sequence (CDS) from alignment at C-linearis_contig11:2320200..2322225-

>mRNA_C-linearis_contig11.1293.1 ID=mRNA_C-linearis_contig11.1293.1|Name=mRNA_C-linearis_contig11.1293.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at C-linearis_contig11:2320200..2322225- (Chordaria linearis ClinC8C monoicous)
ATGCCTGCTCTCGCCACGAACCTCTCTAATCGGATGCCTGCTCTCGCCAC
GAACCTCTCTAATCGGTGCTTGATTTCTAGTTTCTCGACCATGGTGATCG
CACGAAGCCTCAAGGATGCGGCACGACTAGGGAGCGTCACGACCTCGCTG
CTGCTCCGGAGGAGCGAAGACTTGATGTGCCAGAACCTCATGTGCGCGAA
GCTCGGCGGCGCCTGCGTTTGCCGGCTGGCTGTCCACTTGTCGAGACTAA
GGAATCTGAGAAAGCTCGATATTGCCGAAAACGGACTTGGCGTCCTGCCG
GAACCGGTGTTCGAGCTGCCCAACTTGGAGCACCTGGACGTTAGCGTGCT
TGATTTCTAGTTTCTCGACCATGGTGATCGCACGAAGCCTCAAGGATGCG
GCACGACTAGGGAGCGTCACGACCTCGCTGCTGCTCCGGAGGAGCGAAGA
CTTGATGTGCCAGAACCTCATGTGCGCGAAGCTCGGCGGCGCCTGCGTTT
GCCGGCTGGCTGTCCACTTGTCGAGACTAAGGAATCTGAGAAAGCTCGAT
ATTGCCGAAAACGGACTTGGCGTCCTGCCGGAACCGGTGTTCGAGCTGCC
CAACTTGGAGCACCTGGACGTTAGCGGAAACGGCCTCAAGGATCTATCGG
CAAGCATTGGCGCCCTCTCGAGCCTGCGTACTCTCAGAGTATCCGGCAAT
GCCCTCGCGGCTCTGCCCAAGGAGACGGCCTCGTTGCCGCTACTGACAGA
AGTCCACGTGGGCGGCGACAGCGGACTAGACCAGGAGGGTGTGAAAGACG
TGTTGCGCCAGAGACCAGATATCTCCGTTGTGTGGGACGACAACGGAAAG
AAAGCTGAAAAAAATGGCGCAAATACCTGCGCAAGATAGGAAACGGCCTC
AAGGATCTATCGGCAAGCATTGGCGCCCTCTCGAGCCTGCGTACTCTCAG
AGTATCCGGCAATGCCCTCGCGGCTCTGCCCAAGGAGACGGCCTCGTTGC
CGCTACTGACAGAAGTCCACGTGGGCGGCGACAGCGGACTAGACCAGGAG
GGTGTGAAAGACGTGTTGCGCCAGAGACCAGATATCTCCGTTGTGTGGGA
CGACAACGGAAAGAAAGCTGAAAAAAATGGCGCAAATACCTGCGCAAGAT
AG
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