prot_C-linearis_contig104.919.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.919.1
Unique Nameprot_C-linearis_contig104.919.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length186
Homology
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: D8LE99_ECTSI (ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE99_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 2.320e-78
Identity = 127/157 (80.89%), Postives = 140/157 (89.17%), Query Frame = 0
Query:   30 MFRPVQGLVLALVAYASTAFVVPSASQTW-AGRPSVTGARTFAKLHMAAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            MFRP+Q L+LALVA ASTAFVVP+    W A RP+    R  + L+MAAGVAMPEIKTAGPS+G+++KKEVSFET+IRPEDK+KVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQ ANDNGMA VGIWHQEMADAYSTSLKERGLIAETHPA+
Sbjct:    1 MFRPLQVLILALVASASTAFVVPA----WTAMRPAAASGRPISALNMAAGVAMPEIKTAGPSIGVLDKKEVSFETSIRPEDKYKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQ-ANDNGMAQVGIWHQEMADAYSTSLKERGLIAETHPAE 152          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A835ZJP8_9STRA (ATP-dependent Clp protease adaptor protein ClpS-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.690e-26
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0
Query:  102 ETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            E    P DKFKV+LFNDNGNTREYV+RSLVQV+G++E+ A+ IM   A+ NGMALVGIW+ E A+AYS  LK RGL++E  P +
Sbjct:   51 EDQPSPADKFKVMLFNDNGNTREYVARSLVQVIGMTESDAYDIMTM-AHKNGMALVGIWNLERAEAYSDQLKTRGLVSEIFPVE 133          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S2V4Q9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Q9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.170e-16
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   94 VEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIA 179
            +EKK +           +++LLFNDN NTREYV+R L  +VGLSE  AF IM + A+ NGMA+VG W  E+A+AY+ SL   GL +
Sbjct:   69 IEKKGLDNSYQPANGGDYQILLFNDNMNTREYVARCLCTIVGLSEGKAFEIMLE-AHKNGMAVVGSWRYELAEAYNESLNRHGLAS 153          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S2VY96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VY96_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.340e-15
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:   86 TAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            + G  VGLVEKK +  +      D ++V ++ND  NTRE+VSR LVQ+VGLSE  A+  M Q A+ NG+A VG +  E A+ Y  +L E G++ +  P D
Sbjct:   85 STGGGVGLVEKKAMK-DRERTGSDAWEVRIYNDVKNTREFVSRCLVQIVGLSETFAYQTMMQ-AHKNGLAAVGTYAFERAEMYHEALTENGIMCDMIPVD 182          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A0M0LSS8_9EUKA (ATP-dependent clp protease adaptor protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LSS8_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 1.510e-14
Identity = 64/156 (41.03%), Postives = 87/156 (55.77%), Query Frame = 0
Query:   37 LVLALVAYASTAFVVPSASQTWAGRPSVTGA---RTFAKLHMAAGVAMPEIKTAGPSVG---LVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            +VL  +  +++A VVP+ +      P VT A   RT   L  A  VAM       P V    L   K  S + N + + K+KVLLFNDN N REYV+R LV  + G+S+A A+ +MQ+ A+  GMA+VG+W  E+A+AY   LK  GLIA     D
Sbjct:    9 VVLCGLLGSASALVVPARALM----PEVTPASASRTVLSLRTAR-VAMQVDAPVRPKVDVPQLAPTKPSSDKDNEKAK-KYKVLLFNDNVNRREYVARILVGAIPGMSQADAYLVMQK-AHKQGMAVVGVWVFEVAEAYCDKLKSGGLIASVTEED 157          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S2R9I8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9I8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.710e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 0
Query:  110 KFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            +++VLLFND  NT+EYV+R L+ V GLSE  AF  M Q A+ NGM L+GIW +E+A+ ++ +L E GL+    P D
Sbjct:   92 RYRVLLFNDPMNTKEYVARQLMTVAGLSENNAFDCMMQ-AHRNGMGLIGIWMREVAEHHTQTLTEAGLLVSMMPDD 166          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S4HUU8_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HUU8_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0
Query:  110 KFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            K+K+LLFNDN N REYV+R LV  V   S+A A+ +MQ+ A+ NGMA+VG+W  E+A+AY   LK+ GLIA     D
Sbjct:   83 KWKLLLFNDNVNKREYVARVLVSSVPDFSQADAYKVMQK-AHQNGMAVVGVWVFEVAEAYCDKLKQGGLIASVTEED 158          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A6U6GRI4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GRI4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.490e-13
Identity = 42/119 (35.29%), Postives = 69/119 (57.98%), Query Frame = 0
Query:   75 MAAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPE--------DKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            M A +    +KT G    ++++ +V    +  PE        + ++V ++ND  NTRE+V+R LVQ+VGL+E TA+  M   A+ NG+A+VG +  E A+ Y  +LK+ G+I +  P D
Sbjct:   65 MPATIERAPVKTGGGGPAVLDRPKVEERQSKSPEKERENVGNEAWEVRIYNDGMNTREFVARCLVQIVGLTEMTAYQTMMD-AHQNGIAVVGRYVYERAEMYHEALKKNGIICDLVPVD 182          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A7S4EG34_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG34_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.510e-13
Identity = 42/126 (33.33%), Postives = 77/126 (61.11%), Query Frame = 0
Query:   68 RTFAKLHMAAGVAMPEIKTAGPSVGLVEKKEVSFETNIRPE--------DKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD 185
            RT +  ++A  +A   ++ AGP+V  V++  V  + N+ P         + ++V ++ND  NTRE+V+RSLVQ+ G+ E TA+  M   A+ NG+A VG++  E+A+ Y+   +++G++++  P D
Sbjct:   35 RTSSHSNVAMKMAAGTVERAGPAV--VDRPAV--KKNLAPSKQRHQEGGETWEVRIYNDGDNTREHVARSLVQITGMGEMTAYQTMMT-AHQNGIASVGLFAFEVAEVYNEGFRKQGIVSDIIPID 155          
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Match: A0A8J5XX93_DIALT (ClpS domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XX93_DIALT)

HSP 1 Score: 72.4 bits (176), Expect = 6.820e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0
Query:   79 VAMPEIKTAGPSVGLVEKKEVSFETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVV-GLSEATAFHIMQQQANDNGMALVGIWHQEMADAYSTSLKERGLIA 179
            VAM ++ T  PSV L   K  S + N + + K+K+LLFND  N RE+V+R L  V+  ++E TA+ +MQ+ A+  G A+ G+W  E+A+AY   L  +GL A
Sbjct:   39 VAMADVLTRPPSVQLAPTKPSSDQQNAKGK-KYKLLLFNDAVNKREFVARVLTSVIPDMTEPTAYTVMQK-AHTAGFAVCGVWMFELAEAYCDGLTSQGLTA 138          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.919.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE99_ECTSI2.320e-7880.89ATP-dependent Clp protease adaptor protein ClpS n=... [more]
A0A835ZJP8_9STRA2.690e-2661.90ATP-dependent Clp protease adaptor protein ClpS-do... [more]
A0A7S2V4Q9_9STRA5.170e-1648.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2VY96_9STRA7.340e-1544.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A0M0LSS8_9EUKA1.510e-1441.03ATP-dependent clp protease adaptor protein n=1 Tax... [more]
A0A7S2R9I8_9STRA2.710e-1450.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4HUU8_9EUKA1.200e-1353.25Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6U6GRI4_9STRA1.490e-1335.29Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4EG34_9STRA6.510e-1333.33Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8J5XX93_DIALT6.820e-1342.16ClpS domain-containing protein n=2 Tax=Diacronema ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003769Adaptor protein ClpS, corePFAMPF02617ClpScoord: 107..174
e-value: 4.7E-11
score: 42.3
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 90..183
e-value: 4.6E-11
score: 44.2
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 105..180
NoneNo IPR availablePANTHERPTHR33473:SF1ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTICcoord: 96..184
NoneNo IPR availablePANTHERPTHR33473FAMILY NOT NAMEDcoord: 96..184
NoneNo IPR availableTMHMMTMhelixcoord: 29..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:511482..515634 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.919.1mRNA_C-linearis_contig104.919.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 511482..515634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.919.1 ID=prot_C-linearis_contig104.919.1|Name=mRNA_C-linearis_contig104.919.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=186bp
NRSSSSPHHVSANSTTPSTLHAYTRTYTVMFRPVQGLVLALVAYASTAFV
VPSASQTWAGRPSVTGARTFAKLHMAAGVAMPEIKTAGPSVGLVEKKEVS
FETNIRPEDKFKVLLFNDNGNTREYVSRSLVQVVGLSEATAFHIMQQQAN
DNGMALVGIWHQEMADAYSTSLKERGLIAETHPAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003769ClpS_core
IPR014719Ribosomal_L7/12_C/ClpS-like