prot_C-linearis_contig104.914.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.914.1
Unique Nameprot_C-linearis_contig104.914.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length227
Homology
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BLAST of mRNA_C-linearis_contig104.914.1 vs. uniprot
Match: A0A6H5K800_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K800_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 1.160e-103
Identity = 154/203 (75.86%), Postives = 177/203 (87.19%), Query Frame = 0 
Query:   19 LRHSGRQRAA--LSFHRNGGTTPVVESDEDLQPNWSGLERRLKSRVPRERGRGVPEGRTNLKPSEEDFWHEAGVYDYSSSSDASTRAPPKVSTREPSCARLSTIKVGTDNIPRVVSLYKTSVAPVLQVKGFCGAQLFSDRAAGTVQSLTMWESWADLETAVGDKRYAKVMRSLEGLIEAPPDVIDTEVACSILPTTGGGDVSS 219
            LR+ GR+ A   LS+H  GGT+   E DE+L PNWSGLERRL+SRVPRE+G GVPEGRTNLKPSEEDFWH+AGVYDYS +S +S    P+++TREP+CARLST+KV  +N+PRVV+LYKTSVAPVLQVKGFCGAQ+FSDRAAGTVQSLT+W+SW DLE  VG+ RYAK MRSLEGLIEAPPDV+DTEVACSILPTTGGGDVSS
Sbjct:    7 LRYCGRRSATRRLSYHHKGGTS--CEPDEELHPNWSGLERRLQSRVPREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASSSS----PEIATREPACARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRAAGTVQSLTLWQSWGDLEEVVGNSRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGGGDVSS 203
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.914.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K800_9PHAE1.160e-10375.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.100coord: 117..207
e-value: 3.0E-5
score: 26.1
IPR011008Dimeric alpha-beta barrelSUPERFAMILY54909Dimeric alpha+beta barrelcoord: 115..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:488961..491160 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.914.1mRNA_C-linearis_contig104.914.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 488669..491222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.914.1 ID=prot_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=227bp
MASFLQRTASQGYRGGSFLRHSGRQRAALSFHRNGGTTPVVESDEDLQPN
WSGLERRLKSRVPRERGRGVPEGRTNLKPSEEDFWHEAGVYDYSSSSDAS
TRAPPKVSTREPSCARLSTIKVGTDNIPRVVSLYKTSVAPVLQVKGFCGA
QLFSDRAAGTVQSLTMWESWADLETAVGDKRYAKVMRSLEGLIEAPPDVI
DTEVACSILPTTGGGDVSSDEPEEVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel