mRNA_C-linearis_contig104.914.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.914.1 vs. uniprot
Match: A0A6H5K800_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K800_9PHAE) HSP 1 Score: 307 bits (787), Expect = 6.260e-102 Identity = 154/205 (75.12%), Postives = 178/205 (86.83%), Query Frame = 3 Query: 117 LRHSGRQRAA--LSFHRNGGTTPVVESDEDLQPNWSGLERRLKSRVPRERGRGVPEGRTNLKPSEEDFWHEAGVYDYSSSSDASTRAPPKVSTREPSCARLSTIKVGTDNIPRVVSLYKTSVAPVLQVKGFCGAQLFSDRAAGTVQSLTMWESWADLETAVGDKRYAKVMRSLEGLIEAPPDVIDTEVACSILPTTGGGDVSSDE 725
LR+ GR+ A LS+H GGT+ E DE+L PNWSGLERRL+SRVPRE+G GVPEGRTNLKPSEEDFWH+AGVYDYS +S +S P+++TREP+CARLST+KV +N+PRVV+LYKTSVAPVLQVKGFCGAQ+FSDRAAGTVQSLT+W+SW DLE VG+ RYAK MRSLEGLIEAPPDV+DTEVACSILPTTGGGDVSS +
Sbjct: 7 LRYCGRRSATRRLSYHHKGGTS--CEPDEELHPNWSGLERRLQSRVPREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASSSS----PEIATREPACARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRAAGTVQSLTLWQSWGDLEEVVGNSRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGGGDVSSGD 205 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.914.1 >prot_C-linearis_contig104.914.1 ID=prot_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=227bp MASFLQRTASQGYRGGSFLRHSGRQRAALSFHRNGGTTPVVESDEDLQPNback to top mRNA from alignment at C-linearis_contig104:488669..491222- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.914.1 ID=mRNA_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2554bp|location=Sequence derived from alignment at C-linearis_contig104:488669..491222- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:488669..491222- >mRNA_C-linearis_contig104.914.1 ID=mRNA_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at C-linearis_contig104:488669..491222- (Chordaria linearis ClinC8C monoicous)back to top |