mRNA_C-linearis_contig104.914.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.914.1
Unique NamemRNA_C-linearis_contig104.914.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.914.1 vs. uniprot
Match: A0A6H5K800_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K800_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 6.260e-102
Identity = 154/205 (75.12%), Postives = 178/205 (86.83%), Query Frame = 3 
Query:  117 LRHSGRQRAA--LSFHRNGGTTPVVESDEDLQPNWSGLERRLKSRVPRERGRGVPEGRTNLKPSEEDFWHEAGVYDYSSSSDASTRAPPKVSTREPSCARLSTIKVGTDNIPRVVSLYKTSVAPVLQVKGFCGAQLFSDRAAGTVQSLTMWESWADLETAVGDKRYAKVMRSLEGLIEAPPDVIDTEVACSILPTTGGGDVSSDE 725
            LR+ GR+ A   LS+H  GGT+   E DE+L PNWSGLERRL+SRVPRE+G GVPEGRTNLKPSEEDFWH+AGVYDYS +S +S    P+++TREP+CARLST+KV  +N+PRVV+LYKTSVAPVLQVKGFCGAQ+FSDRAAGTVQSLT+W+SW DLE  VG+ RYAK MRSLEGLIEAPPDV+DTEVACSILPTTGGGDVSS +
Sbjct:    7 LRYCGRRSATRRLSYHHKGGTS--CEPDEELHPNWSGLERRLQSRVPREKGHGVPEGRTNLKPSEEDFWHKAGVYDYSEASSSS----PEIATREPACARLSTVKVSAENVPRVVALYKTSVAPVLQVKGFCGAQVFSDRAAGTVQSLTLWQSWGDLEEVVGNSRYAKAMRSLEGLIEAPPDVVDTEVACSILPTTGGGDVSSGD 205
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K800_9PHAE6.260e-10275.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:488669..491222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-00_001090.1
Exons5
Model size1035
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927389.2947598-UTR-C-linearis_contig104:488668..4889601622927389.2947598-UTR-C-linearis_contig104:488668..488960Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 488669..488960 -
1690879671.3383253-UTR-C-linearis_contig104:488668..4889601690879671.3383253-UTR-C-linearis_contig104:488668..488960Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 488669..488960 -
1622927389.3705218-UTR-C-linearis_contig104:491160..4912221622927389.3705218-UTR-C-linearis_contig104:491160..491222Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 491161..491222 -
1690879671.3981419-UTR-C-linearis_contig104:491160..4912221690879671.3981419-UTR-C-linearis_contig104:491160..491222Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 491161..491222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927389.3069715-CDS-C-linearis_contig104:488960..4890891622927389.3069715-CDS-C-linearis_contig104:488960..489089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 488961..489089 -
1690879671.349715-CDS-C-linearis_contig104:488960..4890891690879671.349715-CDS-C-linearis_contig104:488960..489089Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 488961..489089 -
1622927389.3197603-CDS-C-linearis_contig104:489462..4895851622927389.3197603-CDS-C-linearis_contig104:489462..489585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 489463..489585 -
1690879671.3578637-CDS-C-linearis_contig104:489462..4895851690879671.3578637-CDS-C-linearis_contig104:489462..489585Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 489463..489585 -
1622927389.3310933-CDS-C-linearis_contig104:489927..4900131622927389.3310933-CDS-C-linearis_contig104:489927..490013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 489928..490013 -
1690879671.3665884-CDS-C-linearis_contig104:489927..4900131690879671.3665884-CDS-C-linearis_contig104:489927..490013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 489928..490013 -
1622927389.346296-CDS-C-linearis_contig104:490373..4905611622927389.346296-CDS-C-linearis_contig104:490373..490561Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 490374..490561 -
1690879671.376118-CDS-C-linearis_contig104:490373..4905611690879671.376118-CDS-C-linearis_contig104:490373..490561Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 490374..490561 -
1622927389.3560905-CDS-C-linearis_contig104:491005..4911601622927389.3560905-CDS-C-linearis_contig104:491005..491160Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 491006..491160 -
1690879671.389241-CDS-C-linearis_contig104:491005..4911601690879671.389241-CDS-C-linearis_contig104:491005..491160Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 491006..491160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.914.1prot_C-linearis_contig104.914.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 488961..491160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.914.1

>prot_C-linearis_contig104.914.1 ID=prot_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=227bp
MASFLQRTASQGYRGGSFLRHSGRQRAALSFHRNGGTTPVVESDEDLQPN
WSGLERRLKSRVPRERGRGVPEGRTNLKPSEEDFWHEAGVYDYSSSSDAS
TRAPPKVSTREPSCARLSTIKVGTDNIPRVVSLYKTSVAPVLQVKGFCGA
QLFSDRAAGTVQSLTMWESWADLETAVGDKRYAKVMRSLEGLIEAPPDVI
DTEVACSILPTTGGGDVSSDEPEEVA*
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mRNA from alignment at C-linearis_contig104:488669..491222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.914.1 ID=mRNA_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2554bp|location=Sequence derived from alignment at C-linearis_contig104:488669..491222- (Chordaria linearis ClinC8C monoicous)
CTCTCTCCTCTCTCCCTCGTGCAATCCAGGCAGCCAGGACAGGTTCATCG
GGTGCGCACACCATGGCCTCTTTTCTGCAGAGGACTGCCTCGCAAGGGTA
CCGTGGCGGGTCTTTCCTGCGACATAGTGGAAGGCAAAGGGCTGCCCTTT
CCTTCCACCGCAATGGCGGCACGACTCCCGTAGTGGAGTCTGACGAGGAC
CTGCAACCCAATTGGAGGTGAGGTAAACGGTATCAGTGGGTTGCCGCCCA
CTGCTGCTGTGTTGGGGACTTGCTGTATCACACCAAAACAACGCAGCAGC
TACATACACATGCGGAGATCTGTCGTAGGTTGTTACCAATTACCAATTGA
TGTTGAACATCCATTCAGCCGCATAAATTATACGAGATTATCGAGTTTGT
TTTGAGGTGGTGTGCACAACACCTCCGACTTGCTTGACCGTGTGTGTGAG
CAATAGGTCTGTCGCTGTATGGCGTTACTCGAAAGCTGTGTCACTACAGC
AGTACGTCGCCCTTCGGCACTGCCTTTAGCTGCCTGTGGGCTGTGGCATG
TCTTATCTGCCAAGCAAGGTGTAGAAAATCAGGGGCGGCAGAGTAAACTC
AACCTGTACGTGGGGCGCTTGTCAAAGCTCTCCTCCTCCGCATTGTTTTG
CTCTCTGGCAGTGGATTAGAGCGAAGGCTGAAGTCGCGCGTTCCCCGAGA
AAGGGGAAGAGGCGTTCCAGAAGGGCGGACAAACCTAAAGCCGTCCGAGG
AGGACTTTTGGCACGAAGCGGGAGTCTACGACTACTCGAGCTCCAGCGAT
GCCTCGACGAGGGCGCCTCCGAAAGTTTCCACGAGAGAGCCCAGTTGTGG
TGAGTGCTCCCCCCGCCTCTGCTGGCTGTCTCCCTCAAAACGGTCGTTCC
GTCTGTTCACGAGCCGTCCGCTCTTCCTGGTTCTCGTTCTTAGATGCTGG
TACGCTCGTAGCCTACCTTTTGTTCGTTCAATTGGTTGGGGCGGTCGCGT
GTTATGTAGTTTCTCATCGCCCTTTTCTGACGTGTCATCTGCTGTGACGG
GCAGTGGAGGCGACATCACTCGGACTTCTTCCTGCATAGCCCAGTGAACC
CCCCACTTGTACATACGCTCTCGGCTGATCACAATCACAACGTTGTCTGT
CGCCCCATGCCGTACCTGTCGATTCATTGCTCGGCCCAATCGAACAATTT
TTACCTCAGCGCGGCTATCGACGATCAAGGTCGGCACCGACAACATCCCC
CGGGTGGTTTCCCTGTACAAAACCTCCGTTGCACCAGTTTTGCAGGTCGG
TGGAACTACCTCGCCTGGCCTTGTCAGGATTTTTCGCTGTTCGCCGCACG
CCCCGCTGTTGTTCAAGTCGATTTTCAAGCACAGCGCATGTACGTAGTAG
TTTGAGCGCGGATTGGTACCCAACTATCTTTGGAAGTTCGCTTTAGGCAG
TCCGCGCCCCCAGGTTGATGTAAGGCCTGGCTCTTCTCTTTCTTGGTGAA
GGGGTGCGTTTTTCAAGGCTTGTGAAGGGTGCGTGCATAACAACTCCGAC
TGGATAATAACCATTTGTCGTGGCATTGGTTTCACCAGGGGGGGTTGGTT
GCGCCGCGCACTGAACGAGCTCTCCCGCCCGCTACAGGTGAAGGGCTTCT
GTGGGGCGCAGTTGTTTTCGGACCGGGCGGCGGGGACGGTGCAGTCCCTT
ACAATGTGGGAGTCATGGGCAGACCTTGAGACTGCCGTGGGCGACAAACG
CTACGCTAAGGTGATGACTTCCCAGAACGGCCCATGAGCGATATCTTATT
GTTGTAGACTCTTGAGGTCGCAGACGTATCTACGCTGTTGGAGGCTTGGG
ACTTCGCGCGAAAGCGAGGAAGCACTCGACAAATTTGGTGCTCCGGGAGC
GAGTTGAGTCTTACCGCCGCAGCCGCTTTTTCGCGTGTGTGTGTTGTACC
CCTTCACTCACGCCACGCGCATCGTGTATCGATGCTGGGTGTGTCTCACC
GAACTCCAATATATGTTGTCACATAAGTTTGCAGTATCAAGATTTTCTCA
AATGCGAGACAAACAGTTAATTAAAGCCCCACCCAATCCTCACCCTTGAT
TGGCTGCCTTCGTTTTTTTGCTGTGCTTCGCAGGTGATGCGCTCGTTGGA
GGGGCTGATCGAAGCTCCACCGGATGTAATAGACACCGAAGTAGCGTGTT
CCATTCTTCCCACCACCGGGGGCGGAGACGTGTCAAGCGACGAACCCGAA
GAGGTGGCATGAGCACTTGCATGCATGTCGCCTCTCGTGTTGTTGTTTGA
GTCTCGAGGACGGGTGTAGGCAGCTGTAGGATTGAAGGCGGTACAAAGTG
ATGTTAAAAAGCGTGACTGCGAGATGGAGGCACTGACGCATATGTTTCTT
TTGTGTGCTGGCGGTGGCGCCGACATTGGTCGATACTGCTGTTCTCCGGT
ACCATACAATATACGGTAGGTGGAGACATACCCTCCTGTGTGACCCCGGA
TGGTAGCCTAGCTAGTTGTAGTGAAGAGGAGGAGGCAGGCTACGAAAAAA
CATT
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Coding sequence (CDS) from alignment at C-linearis_contig104:488669..491222-

>mRNA_C-linearis_contig104.914.1 ID=mRNA_C-linearis_contig104.914.1|Name=mRNA_C-linearis_contig104.914.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at C-linearis_contig104:488669..491222- (Chordaria linearis ClinC8C monoicous)
ATGGCCTCTTTTCTGCAGAGGACTGCCTCGCAAGGGTACCGTGGCGGGTC
TTTCCTGCGACATAGTGGAAGGCAAAGGGCTGCCCTTTCCTTCCACCGCA
ATGGCGGCACGACTCCCGTAGTGGAGTCTGACGAGGACCTGCAACCCAAT
TGGAGATGGCCTCTTTTCTGCAGAGGACTGCCTCGCAAGGGTACCGTGGC
GGGTCTTTCCTGCGACATAGTGGAAGGCAAAGGGCTGCCCTTTCCTTCCA
CCGCAATGGCGGCACGACTCCCGTAGTGGAGTCTGACGAGGACCTGCAAC
CCAATTGGAGTGGATTAGAGCGAAGGCTGAAGTCGCGCGTTCCCCGAGAA
AGGGGAAGAGGCGTTCCAGAAGGGCGGACAAACCTAAAGCCGTCCGAGGA
GGACTTTTGGCACGAAGCGGGAGTCTACGACTACTCGAGCTCCAGCGATG
CCTCGACGAGGGCGCCTCCGAAAGTTTCCACGAGAGAGCCCAGTTGTGTG
GATTAGAGCGAAGGCTGAAGTCGCGCGTTCCCCGAGAAAGGGGAAGAGGC
GTTCCAGAAGGGCGGACAAACCTAAAGCCGTCCGAGGAGGACTTTTGGCA
CGAAGCGGGAGTCTACGACTACTCGAGCTCCAGCGATGCCTCGACGAGGG
CGCCTCCGAAAGTTTCCACGAGAGAGCCCAGTTGTGCGCGGCTATCGACG
ATCAAGGTCGGCACCGACAACATCCCCCGGGTGGTTTCCCTGTACAAAAC
CTCCGTTGCACCAGTTTTGCAGCGCGGCTATCGACGATCAAGGTCGGCAC
CGACAACATCCCCCGGGTGGTTTCCCTGTACAAAACCTCCGTTGCACCAG
TTTTGCAGGTGAAGGGCTTCTGTGGGGCGCAGTTGTTTTCGGACCGGGCG
GCGGGGACGGTGCAGTCCCTTACAATGTGGGAGTCATGGGCAGACCTTGA
GACTGCCGTGGGCGACAAACGCTACGCTAAGGTGAAGGGCTTCTGTGGGG
CGCAGTTGTTTTCGGACCGGGCGGCGGGGACGGTGCAGTCCCTTACAATG
TGGGAGTCATGGGCAGACCTTGAGACTGCCGTGGGCGACAAACGCTACGC
TAAGGTGATGCGCTCGTTGGAGGGGCTGATCGAAGCTCCACCGGATGTAA
TAGACACCGAAGTAGCGTGTTCCATTCTTCCCACCACCGGGGGCGGAGAC
GTGTCAAGCGACGAACCCGAAGAGGTGGCATGAGTGATGCGCTCGTTGGA
GGGGCTGATCGAAGCTCCACCGGATGTAATAGACACCGAAGTAGCGTGTT
CCATTCTTCCCACCACCGGGGGCGGAGACGTGTCAAGCGACGAACCCGAA
GAGGTGGCATGA
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