prot_C-linearis_contig104.884.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.884.1
Unique Nameprot_C-linearis_contig104.884.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length119
Homology
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 3.980e-80
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 0
Query:    1 MADTMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 118
            MADTMRFCSECNNIMHPKENK DRKL+Y+CNRC Y+EDAQSGSC+YRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS
Sbjct:  120 MADTMRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 6.620e-52
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 0
Query:    5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117
            MRFC ECNNI+HPKEN+  R L YACNRC+Y+E+A   SC+Y NNL+ T   KLDIV  DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+  CG KWV
Sbjct:    1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI)

HSP 1 Score: 124 bits (311), Expect = 1.700e-34
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 0
Query:    4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI++P+ENKA+++L YAC RC + EDA+  SC+YRN +  TA  +  ++Q DV  DPTL RSK   C  C + EAVFFQA    + + ++L FVC N  C H+W
Sbjct:    3 TMKFCRECNNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A1B6PTV6_SORBI (DNA-directed RNA polymerase subunit n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A1B6PTV6_SORBI)

HSP 1 Score: 120 bits (301), Expect = 5.620e-33
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 0
Query:    4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TMRFC ECNNI++PKE++A++ L+YAC  C ++E A S +C+YRN +   AG    ++  DV  DPTL R+K+  C  C + EAVFFQA    +   ++L FVC N +CGH+W
Sbjct:    3 TMRFCRECNNILYPKEDRANKVLLYACRNCEHQEVADS-NCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSVRCAACGHGEAVFFQATTRGED-GMALFFVCCNPSCGHRW 113          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.280e-32
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 0
Query:    6 RFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117
            RFC +C N+  P+E +  R L+  C  C Y+E A S   +Y N +      +LDI+  ++ DDPTLQRS + +CE CNY+EAV FQA+ G  ++SLSLIFVC N  C HKW+
Sbjct:   34 RFCPQCGNMWQPREERTTRTLMLNCRNCGYEEPATSYK-VYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS)

HSP 1 Score: 118 bits (296), Expect = 2.960e-32
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0
Query:    5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 118
            MRFC   +++++PKEN+ +RKL+YAC  C Y E A  G  IY+N L    GN L  V + V DDPTL RS+NA C+KC +NEAVFFQ+D    ++ +L+LIFVC N  C HKWV+
Sbjct:    1 MRFCPHDSSMLYPKENRNERKLLYACRLCRYTEYAP-GQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A8H7UCI9_9FUNG (DNA-directed RNA polymerase subunit n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UCI9_9FUNG)

HSP 1 Score: 117 bits (293), Expect = 8.960e-32
Identity = 51/114 (44.74%), Postives = 81/114 (71.05%), Query Frame = 0
Query:    4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 117
            + ++CSECNN+++P+E+K +RKL++AC  C ++EDA + +C+YR+ ++  A ++  +V TD+  DPTL R+  A C +C Y EAVFFQ+        ++L +VC NRACGH+WV
Sbjct:    3 SFKYCSECNNMLYPREDKTNRKLLFACRNCHFEEDADN-NCVYRHEIVH-APSEQTMVLTDLSADPTLPRTTTA-CPRCGYQEAVFFQSAARRADTKMTLFYVCCNRACGHRWV 113          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A843UFX2_COLES (TFIIS-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UFX2_COLES)

HSP 1 Score: 120 bits (302), Expect = 1.230e-31
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0
Query:    4 TMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            TM+FC ECNNI++PKE++  + L+YAC  C ++E A + +C+YRN +  + G +  ++Q DV  DPTL R+KN  C KCN+ EAVFFQA    + + ++L FVC N +CGH+W
Sbjct:  129 TMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADN-NCVYRNEIHHSVGERTQVLQ-DVAADPTLPRTKNVRCAKCNHPEAVFFQAAARGE-EGMTLFFVCCNPSCGHRW 238          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: UPI001D0951AA (DNA-directed RNA polymerase II subunit RPB9 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0951AA)

HSP 1 Score: 117 bits (293), Expect = 1.520e-31
Identity = 55/112 (49.11%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            +RFC ECNN+++PKE+K ++ L+YAC  C YK+ A S +CIY N ++        IV  DVV DPTL RS++  C KCNY EAVFFQA      + + L +VCTN  C H+W
Sbjct:   21 IRFCQECNNMLYPKEDKENKVLLYACRNCDYKQLADS-NCIYVNKIMHEIDELTHIVP-DVVSDPTLPRSEDHHCPKCNYREAVFFQAQTRRAEEEMRLYYVCTNPQCTHRW 130          
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Match: A0A8B7CCB1_PHODC (DNA-directed RNA polymerase subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7CCB1_PHODC)

HSP 1 Score: 116 bits (291), Expect = 1.800e-31
Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 0
Query:    5 MRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 116
            M+FC ECNNI++PKE+K  + L++AC  C Y+E A S  C+YRN +    G +  I+Q DV +DPTL R+K+  C KC++ EAVFFQA    + + ++L FVC N ACG++W
Sbjct:    4 MKFCRECNNILYPKEDKQKKILLFACRNCDYEEVADS-FCVYRNEVHHAVGERTQILQ-DVANDPTLPRTKDVRCVKCDHPEAVFFQASSRGE-EGMTLFFVCCNPACGYRW 112          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI3.980e-8094.92TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA6.620e-5269.03DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A1Y1IMB2_KLENI1.700e-3450.44DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A0A1B6PTV6_SORBI5.620e-3347.79DNA-directed RNA polymerase subunit n=2 Tax=Androp... [more]
A0A7S3NJ32_9STRA1.280e-3247.32Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B8BUI2_THAPS2.960e-3252.17DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A8H7UCI9_9FUNG8.960e-3244.74DNA-directed RNA polymerase subunit n=2 Tax=Umbelo... [more]
A0A843UFX2_COLES1.230e-3147.79TFIIS-type domain-containing protein n=1 Tax=Coloc... [more]
UPI001D0951AA1.520e-3149.11DNA-directed RNA polymerase II subunit RPB9 n=1 Ta... [more]
A0A8B7CCB1_PHODC1.800e-3148.21DNA-directed RNA polymerase subunit n=3 Tax=Arecac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 6..61
e-value: 2.5E-10
score: 50.3
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 5..40
e-value: 4.0E-10
score: 39.4
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 77..118
e-value: 0.0023
score: 21.3
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 78..116
e-value: 1.8E-5
score: 24.5
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 75..117
score: 9.338
NoneNo IPR availableGENE3D2.20.25.10coord: 2..48
e-value: 2.5E-19
score: 70.4
NoneNo IPR availableGENE3D2.20.25.10coord: 49..118
e-value: 1.9E-21
score: 77.4
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 3..117
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 3..117
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 56..116
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 4..48
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 5..118
e-value: 7.9E-16
score: 56.5
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 7..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:209014..211042 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.884.1mRNA_C-linearis_contig104.884.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 208935..212038 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.884.1 ID=prot_C-linearis_contig104.884.1|Name=mRNA_C-linearis_contig104.884.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=119bp
MADTMRFCSECNNIMHPKENKADRKLVYACNRCSYKEDAQSGSCIYRNNL
ITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQS
LSLIFVCTNRACGHKWVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS