prot_C-linearis_contig104.882.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.882.1
Unique Nameprot_C-linearis_contig104.882.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length378
Homology
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BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: A0A6H5K3A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.530e-86
Identity = 218/412 (52.91%), Postives = 259/412 (62.86%), Query Frame = 0 
Query:    1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQ-VRQATRFCAEHGLHGDSARESLIDHMEEAIAGPVQAPES-------EETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEH-------------------------------HKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 373
            P  RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ED DTQELP ALVI+N++ NPCC +P FR ++   LP L  LD   +    + AGVEECKG +E S L   +++  D      L+VTV S G+S  VPF F       Q ++QA+RFC E+GLHGD  + +L D MEEAIAG      S        E  +E   ++  D  D  E D RL AI+ LQK RARVM+EST SFE                                HKK LL+ATRKLVERKTA+AH RS+ALEEDI KIL++AR ELQLRR R+S EN +FATD +EK+ERVLA+RR+E ++   G   +  SPK
Sbjct:   19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLDLSANVI--EDFDTQELPPALVILNLSSNPCCLDPDFRQRVISCLPGLMALDEVPLVRSSRAAGVEECKGTIEDSQLPLEDEREDDNGGVVTLHVTVHSDGQSHNVPFHFCPTENTAQQLQQASRFCTENGLHGDDDKRNLADQMEEAIAGLKARHTSTGRGISDSERASEEANRKGPDRTDRHETDARLDAIVRLQKARARVMEESTTSFEQVATKHMRHNCLVCVTIFLELNDVVAFLLIMKHKKLLLAATRKLVERKTAAAHSRSNALEEDITKILEDARTELQLRRARVSAENMRFATDMKEKVERVLADRRQEFQSLM-GVRAVAISPK 427
[Close]
BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: D8LE54_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE54_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.180e-59
Identity = 193/380 (50.79%), Postives = 224/380 (58.95%), Query Frame = 0 
Query:    1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQVRQATRFCAEHGLHGDSARESLIDHMEEAIAG-------PVQAPESEETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEHHKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 373
            P  RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   N CC +P FR ++   LP L                                                                     Q++QA+RFC E+GLHGD  + +L   MEEAIAG         +     E  +E   ++  D  D  E D RLHAI+ LQK RARVM+EST SFE HKK LL+ATRKLVE+KTA+AH RSDALEEDI KIL++ARAELQLRR R+S ENR+FATD REK+ERVLA+RR+E+++   G   +  SPK
Sbjct:   19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLM--------------------------------------------------------------------QLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVV-GARAVAISPK 329
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3A1_9PHAE1.530e-8652.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE54_ECTSI1.180e-5950.79Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 318..338
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 8..29
e-value: 680.0
score: 0.6
coord: 30..51
e-value: 5.2E-4
score: 29.3
coord: 52..73
e-value: 1.1
score: 18.3
coord: 74..92
e-value: 2.9
score: 16.9
NoneNo IPR availablePANTHERPTHR45973FAMILY NOT NAMEDcoord: 10..134
NoneNo IPR availablePANTHERPTHR45973:SF1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 46coord: 10..134
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 7..134
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 52..73
e-value: 53.0
score: 7.4
coord: 30..51
e-value: 120.0
score: 4.3
coord: 74..97
e-value: 6.7
score: 14.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..141
e-value: 2.7E-29
score: 103.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 32..87
e-value: 9.6E-8
score: 31.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 76..96
score: 7.358
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 32..53
score: 9.183
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 54..75
score: 8.459
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 10..31
score: 4.763

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:193699..196047 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.882.1mRNA_C-linearis_contig104.882.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 193699..196047 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.882.1 ID=prot_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=378bp
PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYLQHNRIQVIEELD
TLRSLEFLALGSNRIRRLENLRHLSKLQVLDLSDNMIEDVDTQELPHALV
IVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPM
EVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQVRQA
TRFCAEHGLHGDSARESLIDHMEEAIAGPVQAPESEETGTEGTTQERIDY
HDPPEVDERLHAILHLQKTRARVMQESTASFEHHKKTLLSATRKLVERKT
ASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERV
LAERRRETEAAAEGTGVIVSSPKKSLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt