mRNA_C-linearis_contig104.882.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: A0A6H5K3A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A1_9PHAE) HSP 1 Score: 277 bits (709), Expect = 1.530e-86 Identity = 218/412 (52.91%), Postives = 259/412 (62.86%), Query Frame = 1 Query: 1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQ-VRQATRFCAEHGLHGDSARESLIDHMEEAIAGPVQAPES-------EETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEH-------------------------------HKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 1119 P RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ED DTQELP ALVI+N++ NPCC +P FR ++ LP L LD + + AGVEECKG +E S L +++ D L+VTV S G+S VPF F Q ++QA+RFC E+GLHGD + +L D MEEAIAG S E +E ++ D D E D RL AI+ LQK RARVM+EST SFE HKK LL+ATRKLVERKTA+AH RS+ALEEDI KIL++AR ELQLRR R+S EN +FATD +EK+ERVLA+RR+E ++ G + SPK Sbjct: 19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLDLSANVI--EDFDTQELPPALVILNLSSNPCCLDPDFRQRVISCLPGLMALDEVPLVRSSRAAGVEECKGTIEDSQLPLEDEREDDNGGVVTLHVTVHSDGQSHNVPFHFCPTENTAQQLQQASRFCTENGLHGDDDKRNLADQMEEAIAGLKARHTSTGRGISDSERASEEANRKGPDRTDRHETDARLDAIVRLQKARARVMEESTTSFEQVATKHMRHNCLVCVTIFLELNDVVAFLLIMKHKKLLLAATRKLVERKTAAAHSRSNALEEDITKILEDARTELQLRRARVSAENMRFATDMKEKVERVLADRRQEFQSLM-GVRAVAISPK 427
BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: D8LE54_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE54_ECTSI) HSP 1 Score: 205 bits (521), Expect = 1.180e-59 Identity = 193/380 (50.79%), Postives = 224/380 (58.95%), Query Frame = 1 Query: 1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQVRQATRFCAEHGLHGDSARESLIDHMEEAIAG-------PVQAPESEETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEHHKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 1119 P RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N CC +P FR ++ LP L Q++QA+RFC E+GLHGD + +L MEEAIAG + E +E ++ D D E D RLHAI+ LQK RARVM+EST SFE HKK LL+ATRKLVE+KTA+AH RSDALEEDI KIL++ARAELQLRR R+S ENR+FATD REK+ERVLA+RR+E+++ G + SPK Sbjct: 19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLM--------------------------------------------------------------------QLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVV-GARAVAISPK 329 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.882.1 >prot_C-linearis_contig104.882.1 ID=prot_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=378bp PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYLQHNRIQVIEELDback to top mRNA from alignment at C-linearis_contig104:193699..196047- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.882.1 ID=mRNA_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2349bp|location=Sequence derived from alignment at C-linearis_contig104:193699..196047- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:193699..196047- >mRNA_C-linearis_contig104.882.1 ID=mRNA_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at C-linearis_contig104:193699..196047- (Chordaria linearis ClinC8C monoicous)back to top |