mRNA_C-linearis_contig104.882.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.882.1
Unique NamemRNA_C-linearis_contig104.882.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: A0A6H5K3A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.530e-86
Identity = 218/412 (52.91%), Postives = 259/412 (62.86%), Query Frame = 1 
Query:    1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQ-VRQATRFCAEHGLHGDSARESLIDHMEEAIAGPVQAPES-------EETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEH-------------------------------HKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 1119
            P  RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ED DTQELP ALVI+N++ NPCC +P FR ++   LP L  LD   +    + AGVEECKG +E S L   +++  D      L+VTV S G+S  VPF F       Q ++QA+RFC E+GLHGD  + +L D MEEAIAG      S        E  +E   ++  D  D  E D RL AI+ LQK RARVM+EST SFE                                HKK LL+ATRKLVERKTA+AH RS+ALEEDI KIL++AR ELQLRR R+S EN +FATD +EK+ERVLA+RR+E ++   G   +  SPK
Sbjct:   19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLDLSANVI--EDFDTQELPPALVILNLSSNPCCLDPDFRQRVISCLPGLMALDEVPLVRSSRAAGVEECKGTIEDSQLPLEDEREDDNGGVVTLHVTVHSDGQSHNVPFHFCPTENTAQQLQQASRFCTENGLHGDDDKRNLADQMEEAIAGLKARHTSTGRGISDSERASEEANRKGPDRTDRHETDARLDAIVRLQKARARVMEESTTSFEQVATKHMRHNCLVCVTIFLELNDVVAFLLIMKHKKLLLAATRKLVERKTAAAHSRSNALEEDITKILEDARTELQLRRARVSAENMRFATDMKEKVERVLADRRQEFQSLM-GVRAVAISPK 427
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BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Match: D8LE54_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE54_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.180e-59
Identity = 193/380 (50.79%), Postives = 224/380 (58.95%), Query Frame = 1 
Query:    1 PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVDTQELPHALVIVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPMEVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQVRQATRFCAEHGLHGDSARESLIDHMEEAIAG-------PVQAPESEETGTEGTTQERIDYHDPPEVDERLHAILHLQKTRARVMQESTASFEHHKKTLLSATRKLVERKTASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERVLAERRRETEAAAEGTGVIVSSPK 1119
            P  RA+DLL+VEVLRLDWQRI SIQNLDIFT LRELY    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   N CC +P FR ++   LP L                                                                     Q++QA+RFC E+GLHGD  + +L   MEEAIAG         +     E  +E   ++  D  D  E D RLHAI+ LQK RARVM+EST SFE HKK LL+ATRKLVE+KTA+AH RSDALEEDI KIL++ARAELQLRR R+S ENR+FATD REK+ERVLA+RR+E+++   G   +  SPK
Sbjct:   19 PEERAADLLKVEVLRLDWQRIASIQNLDIFTHLRELYLQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLCCLDPDFRQRVISCLPGLM--------------------------------------------------------------------QLQQASRFCTENGLHGDDDKRNLAGQMEEAIAGLKARHISTGRVISDSERDSEEAHRKGPDRTDRHETDARLHAIVRLQKARARVMEESTTSFEQHKKLLLAATRKLVEQKTAAAHGRSDALEEDITKILEDARAELQLRRARVSAENRRFATDMREKVERVLADRRQESQSVV-GARAVAISPK 329
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3A1_9PHAE1.530e-8652.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE54_ECTSI1.180e-5950.79Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:193699..196047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue1e-50
Seed eggNOG ortholog2880.D8LE54
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-00_000990.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1134
Cds size1134
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.882.1prot_C-linearis_contig104.882.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 193699..196047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927384.2520201-CDS-C-linearis_contig104:193698..1938841622927384.2520201-CDS-C-linearis_contig104:193698..193884Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 193699..193884 -
1690879668.612214-CDS-C-linearis_contig104:193698..1938841690879668.612214-CDS-C-linearis_contig104:193698..193884Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 193699..193884 -
1622927384.2613006-CDS-C-linearis_contig104:194156..1942551622927384.2613006-CDS-C-linearis_contig104:194156..194255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 194157..194255 -
1690879668.6242046-CDS-C-linearis_contig104:194156..1942551690879668.6242046-CDS-C-linearis_contig104:194156..194255Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 194157..194255 -
1622927384.2715404-CDS-C-linearis_contig104:194470..1947251622927384.2715404-CDS-C-linearis_contig104:194470..194725Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 194471..194725 -
1690879668.6339083-CDS-C-linearis_contig104:194470..1947251690879668.6339083-CDS-C-linearis_contig104:194470..194725Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 194471..194725 -
1622927384.2819743-CDS-C-linearis_contig104:194865..1950781622927384.2819743-CDS-C-linearis_contig104:194865..195078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 194866..195078 -
1690879668.6465435-CDS-C-linearis_contig104:194865..1950781690879668.6465435-CDS-C-linearis_contig104:194865..195078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 194866..195078 -
1622927384.292664-CDS-C-linearis_contig104:195448..1956011622927384.292664-CDS-C-linearis_contig104:195448..195601Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 195449..195601 -
1690879668.655284-CDS-C-linearis_contig104:195448..1956011690879668.655284-CDS-C-linearis_contig104:195448..195601Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 195449..195601 -
1622927384.3042195-CDS-C-linearis_contig104:195819..1960471622927384.3042195-CDS-C-linearis_contig104:195819..196047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 195820..196047 -
1690879668.6636226-CDS-C-linearis_contig104:195819..1960471690879668.6636226-CDS-C-linearis_contig104:195819..196047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 195820..196047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.882.1

>prot_C-linearis_contig104.882.1 ID=prot_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=378bp
PSCRASDLLRVEVLRLDWQRIPSIQNLDIFTRLRELYLQHNRIQVIEELD
TLRSLEFLALGSNRIRRLENLRHLSKLQVLDLSDNMIEDVDTQELPHALV
IVNMAGNPCCREPTFRHKITCALPDLKVLDGEQVGVMPQLAGVEECKGPM
EVSALSPRNDQLGDKRDQTILYVTVQSGGESKIVPFRFSQAGKMTQVRQA
TRFCAEHGLHGDSARESLIDHMEEAIAGPVQAPESEETGTEGTTQERIDY
HDPPEVDERLHAILHLQKTRARVMQESTASFEHHKKTLLSATRKLVERKT
ASAHCRSDALEEDIDKILKEARAELQLRRERMSTENRQFATDTREKIERV
LAERRRETEAAAEGTGVIVSSPKKSLG*
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mRNA from alignment at C-linearis_contig104:193699..196047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.882.1 ID=mRNA_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2349bp|location=Sequence derived from alignment at C-linearis_contig104:193699..196047- (Chordaria linearis ClinC8C monoicous)
CCGTCTTGCAGGGCTTCAGATCTGCTCAGGGTGGAAGTACTTCGGCTCGA
TTGGCAACGAATACCAAGCATTCAGAATCTAGATATTTTTACGCGCCTAC
GAGAGCTATATCTCCAACACAACAGGATACAAGTGATCGAAGAGTTGGAT
ACGCTCAGAAGTCTGGAGTTTCTGGCTCTCGGCTCCAACCGCATCCGGCG
GCTGGAAAATCTACGCCATCTGAGCAAGGTGAGCCTCCTAAACTACCCGC
CTCTTAACTGCGGGAGCGGGACTTGCAACAGACAGTACGCCTTGCGACGC
TAAAGTTCCGGCACCGTGCCACGAGCCTCACAGAGCATCAAAACCCGCCA
CTCTTGATAGCAATACACCGTCGAGCAGAGGCTAGTATTCCGTTGGTGTG
TTGAAGCGAAAATATTTTTTTGCCTGTGTCGCTCTTCAATTTGCAGCTGC
AGGTGCTAGATCTGTCTGATAATATGATCGAAGACGTAGACACACAAGAG
CTGCCCCACGCTCTAGTAATTGTGAATATGGCCGGGAATCCGTGCTGCCG
TGAGCCTACTTTCCGACACAAGATAACTTGTGCTCTTCCAGATCTGAAGG
TGAGTTGATAAATACTCGCGGAGTTCGAACAGCCCTGTCCACCAGAGGAT
ATAGTCCACTGTCTACTTACCGCCTCACGGCAGGCACTGCTGCCATTCTT
GAAAGGCGTAAAGGAAAATACGGTCTTGTCAACCTCGAGCCGCAGCAACC
AATTACTGCAGTATATAGGTAGTCGGCGATGTTTCGCTTTTGTTCTCCTA
TAGCTAATGGCATTCACTTTCCTACCTTATCGCATGCGGTGGTACACGAC
TTAGACGAGTTGTGCTCTCTCAGCAAACTGAGCAAGCTGAAGGCGGCGCA
TGTTGGCTGTACATTCTAGTCGTTTAGGTATATACGAAGTACGCTTTCAA
CTTTCCTCTGTTTCGGTAGGTCCTGGATGGGGAGCAGGTGGGGGTAATGC
CCCAGCTGGCCGGAGTGGAAGAATGCAAAGGCCCGATGGAAGTTAGCGCT
CTTTCCCCCCGCAACGACCAACTGGGCGACAAGCGCGACCAGACGATCCT
CTACGTGACAGTGCAGTCGGGGGGCGAGTCCAAAATTGTTCCTTTCCGCT
TCTCTCAAGCGGGAAAAATGACGCAGGTGAGGGTGCGCTATCGACCGCAC
AATGCGGCAGTCGTTTGCCCTTGCCGGTGAGATGTTGGAACTAGGTGTAG
TATCCCACACTCATTGACCACCATCCAATGCACTTCGTACGTACTTTTTT
TGTGGTTGTTTTCGAACCACAGCAAGCTACGCGCTTTTGCGCCGAACACG
GCTTACACGGCGATAGCGCCAGAGAATCCCTAATCGATCACATGGAGGAG
GCCATCGCAGGGCCTGTTCAAGCGCCGGAGAGCGAAGAAACCGGCACCGA
GGGCACAACCCAGGAGAGGATCGATTACCATGACCCCCCAGAAGTTGATG
AACGACTTCACGCGATACTTCACCTTCAGAAAACGCGGGCTCGCGTGATG
CAGGAGTCGACGGCTTCTTTTGAGCACGTGCGTGCGCGGTTTGTCCATGG
CATTTATTTCTCAATGAAGCTGAAATTCTGGCCACCTTATCGAGTAACAG
GTATTCAATCCCTTGACTTCAGCTTCTCCGGCAAGGCTACCGAACGTTGC
CTATTGATCCTGTAACGACGTTGTAATCTTCTGGCTGACAAACGCAGTTT
GTTTTGCGCTCCCTTTCTGTGTGAATGGTTTTCGCCATGCAGCACAAGAA
AACCCTCCTGTCTGCTACCCGGAAGCTGGTAGAGCGGAAGACTGCGTCAG
CCCACTGCCGCTCCGATGCCCTGGAGGAAGACATCGACAAGGTGAGCGTC
TGGTACTGTAGCATAGAGCTGAGAAAGTGGTCTGGCTTTTGACAGAAGCT
CCTGCTATCGTTTCGCCTTGCGCCATCATCAGCCAGGCAGATGCGGTTGT
TCTGCCGATCGAACTTATGTCTGCCGATTGTTAACTCATTCATTGTTTGA
TTTGAACAAAATCGAGATGTTGATCTAATCCCTGAGGTGCAATTGTAAAT
GTCCTAGGTAGAGGCTGTTAGTGAACTAACCGTGATCGTCGTACCTACAC
GCAATTGTTCCAGATTCTGAAAGAGGCCCGCGCGGAACTGCAACTCCGTC
GAGAGAGAATGTCCACAGAAAACAGGCAGTTCGCTACGGACACTAGGGAG
AAGATCGAGCGGGTGCTGGCTGAACGGCGACGAGAAACAGAAGCGGCGGC
GGAAGGGACAGGAGTTATCGTTTCCTCGCCGAAAAAAAGCTTGGGATAG
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Coding sequence (CDS) from alignment at C-linearis_contig104:193699..196047-

>mRNA_C-linearis_contig104.882.1 ID=mRNA_C-linearis_contig104.882.1|Name=mRNA_C-linearis_contig104.882.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at C-linearis_contig104:193699..196047- (Chordaria linearis ClinC8C monoicous)
CCGTCTTGCAGGGCTTCAGATCTGCTCAGGGTGGAAGTACTTCGGCTCGA
TTGGCAACGAATACCAAGCATTCAGAATCTAGATATTTTTACGCGCCTAC
GAGAGCTATATCTCCAACACAACAGGATACAAGTGATCGAAGAGTTGGAT
ACGCTCAGAAGTCTGGAGTTTCTGGCTCTCGGCTCCAACCGCATCCGGCG
GCTGGAAAATCTACGCCATCTGAGCAAGCCGTCTTGCAGGGCTTCAGATC
TGCTCAGGGTGGAAGTACTTCGGCTCGATTGGCAACGAATACCAAGCATT
CAGAATCTAGATATTTTTACGCGCCTACGAGAGCTATATCTCCAACACAA
CAGGATACAAGTGATCGAAGAGTTGGATACGCTCAGAAGTCTGGAGTTTC
TGGCTCTCGGCTCCAACCGCATCCGGCGGCTGGAAAATCTACGCCATCTG
AGCAAGCTGCAGGTGCTAGATCTGTCTGATAATATGATCGAAGACGTAGA
CACACAAGAGCTGCCCCACGCTCTAGTAATTGTGAATATGGCCGGGAATC
CGTGCTGCCGTGAGCCTACTTTCCGACACAAGATAACTTGTGCTCTTCCA
GATCTGAAGCTGCAGGTGCTAGATCTGTCTGATAATATGATCGAAGACGT
AGACACACAAGAGCTGCCCCACGCTCTAGTAATTGTGAATATGGCCGGGA
ATCCGTGCTGCCGTGAGCCTACTTTCCGACACAAGATAACTTGTGCTCTT
CCAGATCTGAAGGTCCTGGATGGGGAGCAGGTGGGGGTAATGCCCCAGCT
GGCCGGAGTGGAAGAATGCAAAGGCCCGATGGAAGTTAGCGCTCTTTCCC
CCCGCAACGACCAACTGGGCGACAAGCGCGACCAGACGATCCTCTACGTG
ACAGTGCAGTCGGGGGGCGAGTCCAAAATTGTTCCTTTCCGCTTCTCTCA
AGCGGGAAAAATGACGCAGGTGAGGGTCCTGGATGGGGAGCAGGTGGGGG
TAATGCCCCAGCTGGCCGGAGTGGAAGAATGCAAAGGCCCGATGGAAGTT
AGCGCTCTTTCCCCCCGCAACGACCAACTGGGCGACAAGCGCGACCAGAC
GATCCTCTACGTGACAGTGCAGTCGGGGGGCGAGTCCAAAATTGTTCCTT
TCCGCTTCTCTCAAGCGGGAAAAATGACGCAGGTGAGGCAAGCTACGCGC
TTTTGCGCCGAACACGGCTTACACGGCGATAGCGCCAGAGAATCCCTAAT
CGATCACATGGAGGAGGCCATCGCAGGGCCTGTTCAAGCGCCGGAGAGCG
AAGAAACCGGCACCGAGGGCACAACCCAGGAGAGGATCGATTACCATGAC
CCCCCAGAAGTTGATGAACGACTTCACGCGATACTTCACCTTCAGAAAAC
GCGGGCTCGCGTGATGCAGGAGTCGACGGCTTCTTTTGAGCACCAAGCTA
CGCGCTTTTGCGCCGAACACGGCTTACACGGCGATAGCGCCAGAGAATCC
CTAATCGATCACATGGAGGAGGCCATCGCAGGGCCTGTTCAAGCGCCGGA
GAGCGAAGAAACCGGCACCGAGGGCACAACCCAGGAGAGGATCGATTACC
ATGACCCCCCAGAAGTTGATGAACGACTTCACGCGATACTTCACCTTCAG
AAAACGCGGGCTCGCGTGATGCAGGAGTCGACGGCTTCTTTTGAGCACCA
CAAGAAAACCCTCCTGTCTGCTACCCGGAAGCTGGTAGAGCGGAAGACTG
CGTCAGCCCACTGCCGCTCCGATGCCCTGGAGGAAGACATCGACAAGCAC
AAGAAAACCCTCCTGTCTGCTACCCGGAAGCTGGTAGAGCGGAAGACTGC
GTCAGCCCACTGCCGCTCCGATGCCCTGGAGGAAGACATCGACAAGATTC
TGAAAGAGGCCCGCGCGGAACTGCAACTCCGTCGAGAGAGAATGTCCACA
GAAAACAGGCAGTTCGCTACGGACACTAGGGAGAAGATCGAGCGGGTGCT
GGCTGAACGGCGACGAGAAACAGAAGCGGCGGCGGAAGGGACAGGAGTTA
TCGTTTCCTCGCCGAAAAAAAGCTTGGGATAGATTCTGAAAGAGGCCCGC
GCGGAACTGCAACTCCGTCGAGAGAGAATGTCCACAGAAAACAGGCAGTT
CGCTACGGACACTAGGGAGAAGATCGAGCGGGTGCTGGCTGAACGGCGAC
GAGAAACAGAAGCGGCGGCGGAAGGGACAGGAGTTATCGTTTCCTCGCCG
AAAAAAAGCTTGGGATAG
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