mRNA_C-linearis_contig104.877.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig104.877.1
Unique NamemRNA_C-linearis_contig104.877.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig104.877.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 2.690e-68
Identity = 139/269 (51.67%), Postives = 179/269 (66.54%), Query Frame = 1 
Query: 1090 AGQRLQATWPWVFKHVLRCSRISSKIVRVSQCRQVHHHDGRLSGKAFLATGLAAFAVYLEIVPAADGETPTTLFRVLLCTFQAVMIAVLLVNMVQAVEPMANKE---RLRLRPWAQHCLDHNVFDKSRYLALSVALVW-GGLVAVVATQLPYDSE-LGWSVAITCLVVWGLSLASVSPGVALMGVWGILWLIPAGLALVLRSVFDAGLMLINKLARARRRMTREIRDHATVKERNACGILAQVLPLLLRVSAAHPTVRRLLAHPSALLY 1881
            AG   +ATWPWVFKH+L C+R+   IVRVSQCR V HH G+LSG+ FLA GLAAF VYLE+ P  DG+TP  LFR+LL  FQA M+AVL+VNMVQAVEPM       + RLRPWA+  LD NVFD   YL L V ++W GG+   +   + ++ E LG+++ + CL+V GLS+A+V+PG+AL+G WG +WL+P GLA V RS FD  LMLINK++   RRM  E+  HA    R    +   +L  LL+V    P    L++ P  LLY
Sbjct:  281 AGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPTTDGDTPL-LFRILLNGFQAAMVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGGVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSV-RDILKFLLQVLPLTPLF--LVSLPIPLLY 545
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH51_9PHAE2.690e-6851.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:138295..143191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size2631
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.877.1prot_C-linearis_contig104.877.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig104 141902..142612 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.1721551-UTR-C-linearis_contig104:138294..1385211622927383.1721551-UTR-C-linearis_contig104:138294..138521Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 138295..138521 +
1690879667.8620431-UTR-C-linearis_contig104:138294..1385211690879667.8620431-UTR-C-linearis_contig104:138294..138521Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 138295..138521 +
1622927383.1854687-UTR-C-linearis_contig104:140211..1410911622927383.1854687-UTR-C-linearis_contig104:140211..141091Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 140212..141091 +
1690879667.8722053-UTR-C-linearis_contig104:140211..1410911690879667.8722053-UTR-C-linearis_contig104:140211..141091Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 140212..141091 +
1622927383.1943376-UTR-C-linearis_contig104:141667..1419011622927383.1943376-UTR-C-linearis_contig104:141667..141901Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 141668..141901 +
1690879667.8813841-UTR-C-linearis_contig104:141667..1419011690879667.8813841-UTR-C-linearis_contig104:141667..141901Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 141668..141901 +
1622927383.2171707-UTR-C-linearis_contig104:142612..1431911622927383.2171707-UTR-C-linearis_contig104:142612..143191Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 142613..143191 +
1690879667.9000227-UTR-C-linearis_contig104:142612..1431911690879667.9000227-UTR-C-linearis_contig104:142612..143191Chordaria linearis ClinC8C monoicousUTRC-linearis_contig104 142613..143191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927383.2053933-CDS-C-linearis_contig104:141901..1426121622927383.2053933-CDS-C-linearis_contig104:141901..142612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 141902..142612 +
1690879667.8909302-CDS-C-linearis_contig104:141901..1426121690879667.8909302-CDS-C-linearis_contig104:141901..142612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig104 141902..142612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig104.877.1

>prot_C-linearis_contig104.877.1 ID=prot_C-linearis_contig104.877.1|Name=mRNA_C-linearis_contig104.877.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=237bp
MIAVLLVNMVQAVEPMANKERLRLRPWAQHCLDHNVFDKSRYLALSVALV
WGGLVAVVATQLPYDSELGWSVAITCLVVWGLSLASVSPGVALMGVWGIL
WLIPAGLALVLRSVFDAGLMLINKLARARRRMTREIRDHATVKERNACGI
LAQVLPLLLRVSAAHPTVRRLLAHPSALLYHVDVDFLPDRRLVAVPRQPV
PTVPDPRRLRQRGLENGPPRDGHRAEAHDETSRREG*
back to top

mRNA from alignment at C-linearis_contig104:138295..143191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.877.1 ID=mRNA_C-linearis_contig104.877.1|Name=mRNA_C-linearis_contig104.877.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4897bp|location=Sequence derived from alignment at C-linearis_contig104:138295..143191+ (Chordaria linearis ClinC8C monoicous)
GCAGGGTTTAATCATCGCGACAGCCCGTATCATTGGCGAGGAAGTGCATA
CATTCGTTCAGAACTTGAACTTTTTCATGGTGTGCTTTACATGTACGCCA
CCGGAAGAGCGTGACCACCAGTCAGTCATTGTGACAAAAAACGCGCGGTG
CACCCGCACTGGATTTTCGTCCATGATGATGCGATTCACTGGATTGACGC
CTCCCAAGTCCGTCCCCCCTTCTACATGTGAGTGTATTGATGTTGTGACA
CTCGGCTCGCCGTAGTGGAAGGAAGCAACGCAAGAATGCGGAGAAGCTAC
TGCGGTAGATTTGTACATTACATACAGCGTGCCAAAAATAAAAATCCCTT
CCCGGCCTTTCTTCGTGCACCAAAAGAAAGAAGCAGTGCCAAGGCTTTCC
TTCGCGTCTGCCATGAAACTTCCGTTGTATCTGTCGGCATGGGTCTGGTT
CCCTGAGTTTTTAATACAGTAGGCGCCACCACTTAAGAACCTCTTGTTTT
GCCCGAGGCTCGCGGCTTATTGGCCGCCCAAACCGAGCACGTGTTCTTAT
TTGCCAAGTTCTTATTTCGGCCAGGAAATATGCTACTTACGCATGGGTTC
TTGTTCTTATTTCGACAACAAAGCGACCTACGTGGGCAGCCCTCCAGCTG
GTATTATTCCGTTCACAATACTAAGAGTAGTCATCATCACATGCCTACAT
ACATCATCAGCAGCCTCTACTCTAGGACTCTGGACGACGGCAGCACCGTG
TGGTTCAAATGCATCTGCCTCCACGGCCAGTCTCAAAACTTCACGATACT
CACACACATCGACCAACACTTGAGCAAAATAAAAGCGCACGTCACCATGG
AACAACTCTCAACCCCGTTGGTCCACAAGCGTTACGTTGGGCCTCGATAC
TCTCCCCGATCTACTCACAGCCCGGACGGAATTACCACCCACTTGCTCTG
GTGTGATCTTTTCTAGCAAAACCCACGAGCCTTTCACTGCCTCCGGGTCT
CCACTATACTTTTCGATATTATATCCTGTTGGGGGGGGGGGAGGGGGGTA
TCTTGATATTCGATCCTGCTGGGGGGGGCGTTACCTCGGCGGATCTTGGA
TCTTGGGGTTACCCACCCACCACCTGCAACCCCTATGCGATGTTCTTATC
TTCGGCCGCCATCTATTTATGTACTCCGTTCTTATTCATTGCGGCAGAGT
TACACCTCAGTTGCAGGTTCTAGTTCTTATGGCACGTCAGATTTGAGCAC
ATGTTCTTATGGTAAAGTTGTTATATTTTGGATATTTTGAGGCTGAAGTT
CTTAAGTGCTAAGTTCTTAAGTGGTGGCGCCTACTGTAGTGGACCGAGGG
TTTGCTGCGGTGTCTTGCTTCCTGCCTAGATACATAAAACCTCACAGTCA
CAAACCCCCGAGATTCCGCCGCATTTTTCGCCGCTGGGGTTGTTTTTCCG
TGCAACTCGCATTTCTGTACCATGTGCGATTACACACGAAAAGCTTTAAC
CGGTGGACACGCAGCAGTGTGCATACTTGAGCAAGGTCGGGACGACAAAT
CTCTCTCGGTCTCTCTTATTTTCTATGGAGTATATTTTTTACCGCTTGAT
GCATCTCCGGGCGTGTCCACAAAACGGGCAAGTCGATAGACTGCATGTAG
TGTAGGAGCCAACAACCGCTGCAAACGGTGAAATAACTACCCCGACATAC
GACACTGCCTGAGCACAAGCTTCTCGACAGCAGTTAGTTGCAACATTCCC
CAACACGGTCAATTTTCCCTTGTTGTTTGTTGCGCGTGTTTTACGCGATC
GTCACTCGGCGCATCTTTGTTGCTGATTTCCTTGTTTCTGCTCATCCTTG
CTCACCCCCGCGAATTATGTACGTGCGTGATGCCGATCTCCCTCCCGACC
GTTGCCTTTGATTGAAGACGGTCACCTATGGGACACACGCTCTTGGAGAT
GAGCGATCGCTTTCGGAGGAGCTGTTTGACTCTTTGGGGTTCAGACCGTG
GGAACAATTCAGTTGTTTGGACCACCTGCCTCGCCTTCGACGCCATGACC
TCTGCCTGCTTGACAAGGCCATTTCCCAGCTTAGGCCGCAGCATGTCCGA
GTATGCGTTGTCGAAGTAGACACGTTCACGGTGAGAGGAAAGGGGGGGAG
GGCCGCCAAATGAGCTATGACCCCCCGCAAGGTTGTGAGTTGATTGATCC
TCAAGCCGCTGCCGTCACGGAAACTATAGGCACAGGTGCGTGGATCGTTT
GCTCCTTCACTACTGTCACAACGCAATGCTCTCTTTCCCCCGTGCGCTTG
TGACGTAGGAGAGCGAGTGCACAATCGCGAAGGGTGGCGTTCCCCTTCAC
CTTGCACACGGTACCTACCGCTTGAAGCAGCAAGATGACCGTCACCAGAC
CCTCCCCCGAGTGATGAAACCCGTTTCAACCCACGCCCGGCCATGTCGGC
GGCAACGGGGGAGGAAGGAGGCGCACAAGAACAACCGGCAGCATCGACCC
TTCGACAGATAAGGAACCACCCGAAATCGTCCTTTAATGGGGACGTAAGA
TGCGCCTGGGGGGGAACCTCGCGGTTTGCCCTGCTACCGAGTCTGTGAAG
CGGCTCGTCCAGGCATATTTGGTGTGCGAGGTGGTCTACGACGACAACAA
GAGAGAGAATTGGTTCAAAGAACGAGCACACCTGGCCAAGGCGGAGTTTT
GCCTCGGCGAGGACAAGGCGGCATTGATGGGCGTCGAGCTGGGCGAGGCG
ACGCCTGCAGAGCAGCGTGAGCTAGAGAAGCTGGTCAGCGACTACAGGTG
GGTGGGTTGTTCGGTGACGCGGACATGCCTTCTCCTCTCACCGGCGAAAC
GGCATGATGTGCAGCACTACAGACGGAAAAATTGCCATGCTGGATGGTGA
GATCCATCATAGATTCAGGTTTTAGTCGCAGCCAAAAATCATCGGCTGTG
TCTCTCTCATCTTCCCTGCGATCTTCGCCCCGTGGTTTCCTTCTCTCGCG
AACAGCTTTCACGACGCCTCTATCGGGGTCATTTCGCTCGTGACGAGCAT
TTAATTTACACATTCGGTGTCCTCGGGAGGAACGACGTCAGGGTCCTGAC
CCTGATATCGATAGGGGTGGTCGCGGGCTTGCACCAAGAGGTGGGCGAGG
TTGGTCTTGCTACCCAGCTTTCTTGTGAGCAGGTTTAGGAACATGTCGGC
GCTCTCGTGGGTCATATTTAGCCTCTGATCCAACTGTCCCCGATGCGCAC
GGGGCAGGGGTTCTTATGGCATCCCGTCCGCAGGCTTGAACTGGCAGCCC
GCCGCGTATTGCCCCCATACAGTTCGGCAATACATCCGTTTTTACTTGGA
TGGATGTTTGCTTTTTTTTCCAGGCCACCTGGCCGTGGGTCTTCAAGCAC
GTCCTCCGGTGCTCCCGCATATCGAGCAAGATCGTCAGAGTATCTCAGTG
CCGACAAGTGCACCACCATGACGGGCGACTTTCCGGGAAGGCCTTCCTTG
CGACCGGGCTAGCGGCGTTCGCCGTGTATCTCGAGATCGTGCCGGCTGCG
GACGGCGAGACGCCGACGACGCTTTTTCGAGTCCTGCTCTGCACCTTCCA
AGCGGTCATGATCGCCGTCCTGCTGGTGAACATGGTGCAGGCGGTGGAGC
CCATGGCCAACAAGGAGCGGCTGCGGCTGCGTCCGTGGGCGCAGCACTGC
TTGGACCACAACGTCTTCGACAAGTCGCGTTACCTCGCTCTGAGCGTCGC
GCTCGTGTGGGGAGGCCTTGTTGCGGTCGTAGCGACGCAGCTCCCGTACG
ACTCGGAGCTTGGCTGGAGCGTCGCGATAACCTGCTTGGTGGTTTGGGGC
TTGTCCCTTGCCTCGGTAAGCCCGGGGGTGGCGCTCATGGGTGTCTGGGG
AATCTTGTGGCTCATTCCGGCGGGCCTCGCGTTGGTTCTCCGCTCGGTGT
TCGACGCCGGGTTGATGCTGATCAACAAGCTGGCCCGAGCGAGGCGGCGG
ATGACGAGGGAGATCCGTGATCACGCCACCGTCAAAGAACGCAACGCCTG
CGGGATCCTCGCTCAGGTGCTGCCGCTCCTCCTTCGGGTGTCGGCCGCTC
ACCCCACTGTTCGTCGTCTCCTTGCCCATCCGTCTGCTCTACTTTATCAT
GTGGATGTCGATTTTCTCCCGGATCGCCGACTTGTTGCTGTACCCCGTCA
GCCCGTTCCGACTGTACCCGATCCTAGGCGACTACGGCAGCGTGGCCTGG
AGAATGGGCCACCTCGGGATGGACATCGAGCAGAAGCCCATGACGAAACT
TCTCGGCGAGAAGGTTGATGAAATGAAGAAGGACGACCTTTTCGGCAGCG
GGGTGATCCCTTCCCACCCATACTCACTCGCCCCTCGACTACAAATACCC
AGCGCATCCCAACCAGGACCTCGAGTGTGTACCACCCAGGCTGGGGTGCG
TCGCTATAGTGCCTCAAGACGAAGACGAAAAGCAAGAACAGCAGGCTCTT
TTTGTGAACAGCGACGTTATTTTCCGCGGGATGAAAGCGGAGGGTAGTGG
TGCTACCGGTGGCGGCAATGGGCCACCGAACGCACCCGATAGTTTGGTTG
GGCCGGCCGCGAGAAAAAATGGAGGATCGTGTACATTTATTTATTTTCTC
GGCATTGACCTACTTTTGTATGGGTGAAAGCGACAGACTTCTGTTGGGAG
TTACCATTGCGTTCGGTTTCGGTGTACATGGGAGTACACGGGAGGTTTAC
ATGTGATCGACCTCCTTAAGCACACACCGCTGGTGTGGCCCCGATGGCCC
ATTACAACGCTTTTTTGCTGGAGGCCGTCGAACACAAAAAAAAATGCCAA
GGTAGATAGACTAAGTTACGCGGAAATTGGAAACAACGGTGGCGCTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig104:138295..143191+

>mRNA_C-linearis_contig104.877.1 ID=mRNA_C-linearis_contig104.877.1|Name=mRNA_C-linearis_contig104.877.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at C-linearis_contig104:138295..143191+ (Chordaria linearis ClinC8C monoicous)
ATGATCGCCGTCCTGCTGGTGAACATGGTGCAGGCGGTGGAGCCCATGGC
CAACAAGGAGCGGCTGCGGCTGCGTCCGTGGGCGCAGCACTGCTTGGACC
ACAACGTCTTCGACAAGTCGCGTTACCTCGCTCTGAGCGTCGCGCTCGTG
TGGGGAGGCCTTGTTGCGGTCGTAGCGACGCAGCTCCCGTACGACTCGGA
GCTTGGCTGGAGCGTCGCGATAACCTGCTTGGTGGTTTGGGGCTTGTCCC
TTGCCTCGGTAAGCCCGGGGGTGGCGCTCATGGGTGTCTGGGGAATCTTG
TGGCTCATTCCGGCGGGCCTCGCGTTGGTTCTCCGCTCGGTGTTCGACGC
CGGGTTGATGCTGATCAACAAGCTGGCCCGAGCGAGGCGGCGGATGACGA
GGGAGATCCGTGATCACGCCACCGTCAAAGAACGCAACGCCTGCGGGATC
CTCGCTCAGGTGCTGCCGCTCCTCCTTCGGGTGTCGGCCGCTCACCCCAC
TGTTCGTCGTCTCCTTGCCCATCCGTCTGCTCTACTTTATCATGTGGATG
TCGATTTTCTCCCGGATCGCCGACTTGTTGCTGTACCCCGTCAGCCCGTT
CCGACTGTACCCGATCCTAGGCGACTACGGCAGCGTGGCCTGGAGAATGG
GCCACCTCGGGATGGACATCGAGCAGAAGCCCATGACGAAACTTCTCGGC
GAGAAGGTTGAATGATCGCCGTCCTGCTGGTGAACATGGTGCAGGCGGTG
GAGCCCATGGCCAACAAGGAGCGGCTGCGGCTGCGTCCGTGGGCGCAGCA
CTGCTTGGACCACAACGTCTTCGACAAGTCGCGTTACCTCGCTCTGAGCG
TCGCGCTCGTGTGGGGAGGCCTTGTTGCGGTCGTAGCGACGCAGCTCCCG
TACGACTCGGAGCTTGGCTGGAGCGTCGCGATAACCTGCTTGGTGGTTTG
GGGCTTGTCCCTTGCCTCGGTAAGCCCGGGGGTGGCGCTCATGGGTGTCT
GGGGAATCTTGTGGCTCATTCCGGCGGGCCTCGCGTTGGTTCTCCGCTCG
GTGTTCGACGCCGGGTTGATGCTGATCAACAAGCTGGCCCGAGCGAGGCG
GCGGATGACGAGGGAGATCCGTGATCACGCCACCGTCAAAGAACGCAACG
CCTGCGGGATCCTCGCTCAGGTGCTGCCGCTCCTCCTTCGGGTGTCGGCC
GCTCACCCCACTGTTCGTCGTCTCCTTGCCCATCCGTCTGCTCTACTTTA
TCATGTGGATGTCGATTTTCTCCCGGATCGCCGACTTGTTGCTGTACCCC
GTCAGCCCGTTCCGACTGTACCCGATCCTAGGCGACTACGGCAGCGTGGC
CTGGAGAATGGGCCACCTCGGGATGGACATCGAGCAGAAGCCCATGACGA
AACTTCTCGGCGAGAAGGTTGA
back to top