Homology
BLAST of mRNA_C-linearis_contig104.877.1 vs. uniprot
Match:
A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE)
HSP 1 Score: 141 bits (356), Expect = 4.840e-35
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 0
Query: 1 MIAVLLVNMVQAVEPMANKE---RLRLRPWAQHCLDHNVFDKSRYLALSVALVW-GGLVAVVATQLPYDSE-LGWSVAITCLVVWGLSLASVSPGVALMGVWGILWLIPAGLALVLRSVFDAGLMLINKLARARRRMTREIRDHATVKERNACGILAQVLPLLLRVSAAHPTVRRLLAHPSALLY 180
M+AVL+VNMVQAVEPM + RLRPWA+ LD NVFD YL L V ++W GG+ + + ++ E LG+++ + CL+V GLS+A+V+PG+AL+G WG +WL+P GLA V RS FD LMLINK++ RRM E+ HA R + +L LL+V P L++ P LLY
Sbjct: 364 MVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSGGVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSV-RDILKFLLQVLPLTPLF--LVSLPIPLLY 545
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.877.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 1
M I A V L L V N M V Q A V E P M A N K E R L R L R P W A Q H C L D H N V F D K S R Y L A L S V A L V W G G L V A V V A T Q L P Y D S E L G W S V A I T C L V V W G L S L A S V S P G V A L M G V W G I L W L I P A G L A L V L R S V F D A G L M L I N K L A R A R R R M T R E I R D H A T V K E R N A C G I L A Q V L P L L L R V S A A H P T V R R L L A H P S A L L Y H V D V D F L P D R R L V A V P R Q P V P T V P D P R R L R Q R G L E N G P P R D G H R A E A H D E T S R R E G * 20 40 60 80 100 120 140 160 180 200 220 Expect = 4.84e-35 / Id = 45.95 Sequence A0A6H5JH51_9PHAE
Match Name E-value Identity Description
A0A6H5JH51_9PHAE 4.840e-35 45.95 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name:
InterProScan on OGS1.0
Date Performed: 2022-09-29
M I A V L L V N M V Q A V E P M A N K E R L R L R P W A Q H C L D H N V F D K S R Y L A L S V A L V W G G L V A V V A T Q L P Y D S E L G W S V A I T C L V V W G L S L A S V S P G V A L M G V W G I L W L I P A G L A L V L R S V F D A G L M L I N K L A R A R R R M T R E I R D H A T V K E R N A C G I L A Q V L P L L L R V S A A H P T V R R L L A H P S A L L Y H V D V D F L P D R R L V A V P R Q P V P T V P D P R R L R Q R G L E N G P P R D G H R A E A H D E T S R R E G * 20 40 60 80 100 120 140 160 180 200 220 Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Sequence TRANSMEMBRANE NON_CYTOPLASMIC_DOMAIN TRANSMEMBRANE SIGNAL_PEPTIDE_N_REGION NON_CYTOPLASMIC_DOMAIN CYTOPLASMIC_DOMAIN SIGNAL_PEPTIDE_C_REGION CYTOPLASMIC_DOMAIN SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE TRANSMEMBRANE TMhelix TMhelix TMhelix
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 72..93 None No IPR available PHOBIUS NON_CYTOPLASMIC_DOMAIN Non cytoplasmic domain coord: 94..98 None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 42..60 None No IPR available PHOBIUS SIGNAL_PEPTIDE_N_REGION Signal peptide N-region coord: 1..1 None No IPR available PHOBIUS NON_CYTOPLASMIC_DOMAIN Non cytoplasmic domain coord: 13..41 None No IPR available PHOBIUS CYTOPLASMIC_DOMAIN Cytoplasmic domain coord: 61..71 None No IPR available PHOBIUS SIGNAL_PEPTIDE_C_REGION Signal peptide C-region coord: 8..12 None No IPR available PHOBIUS CYTOPLASMIC_DOMAIN Cytoplasmic domain coord: 123..236 None No IPR available PHOBIUS SIGNAL_PEPTIDE_H_REGION Signal peptide H-region coord: 2..7 None No IPR available PHOBIUS SIGNAL_PEPTIDE Signal Peptide coord: 1..12 None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 99..122 None No IPR available TMHMM TMhelix coord: 42..64 None No IPR available TMHMM TMhelix coord: 93..115 None No IPR available TMHMM TMhelix coord: 69..91
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_C-linearis_contig104.877.1 ID=prot_C-linearis_contig104.877.1|Name=mRNA_C-linearis_contig104.877.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=237bp back to top