prot_C-linearis_contig104.872.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig104.872.1
Unique Nameprot_C-linearis_contig104.872.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length174
Homology
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 6.710e-78
Identity = 130/175 (74.29%), Postives = 141/175 (80.57%), Query Frame = 0
Query:    1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN-YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAAASTSPPSPSPEVDTSAAFGGIPASIP 174
            +FD+GGEGV YSDTTPGN+GG FRPNEDVDISG  + YHVAWIR  EFLRYTVNVEKAASAF FTFQVATIP +   GSFRVVTGGTGCDDYT DLSGLV VPSTG W TF+S+ +SG G  GL VGRATLWLC+VS +FNLDSFTM A     PSPS E +   AFGGIPA IP
Sbjct:  120 KFDHGGEGVSYSDTTPGNSGGVFRPNEDVDISGGHDDYHVAWIRATEFLRYTVNVEKAASAFDFTFQVATIPSYHDSGSFRVVTGGTGCDDYTSDLSGLVVVPSTGGWGTFASLPVSGGGNNGLGVGRATLWLCIVSSHFNLDSFTMEAVLPPTPSPSHEEE---AFGGIPAVIP 291          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.900e-51
Identity = 91/116 (78.45%), Postives = 99/116 (85.34%), Query Frame = 0
Query:    1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN-YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEI 115
            +FD+GGEGV YSDTTPGN+GG FRPNEDVDISG  + YHVAWIR  EFLRYTVNVEKAASAF FTFQVATIP +   GSFRVVTGGTGCDDYT DLSGLV VPSTG W TF+S+ +
Sbjct:  868 KFDHGGEGVSYSDTTPGNSGGVFRPNEDVDISGGHDDYHVAWIRATEFLRYTVNVEKAASAFDFTFQVATIPSYHDSGSFRVVTGGTGCDDYTTDLSGLVVVPSTGGWGTFASLPV 983          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: D7FTA2_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA2_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 6.190e-40
Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = 0
Query:    2 FDYGGEGVGYSDTTPGNTGGAFRPNEDVDIS--GDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAAASTSPPSPSP 158
            FD GGEGVGY DTT GN+GGA R  EDVD+   G   Y+V W+ E E+L YTV V +    F F F VA     D  G  +VV+GGTGC DY  DLSG+V V STG W TF +  +S  G+GGL  G   +W+C+++  FN+DSFTM A  T  P+P+P
Sbjct:  776 FDSGGEGVGYHDTTAGNSGGALRRTEDVDVKAGGAGGYYVGWVAESEYLIYTVEVTEDVDEFDFEFVVAAPS--DLGGQMQVVSGGTGCSDYVTDLSGVVEVASTGSWATFETKSLSAGGSGGLEAGSHIIWICIIAPGFNIDSFTMTAHVTKGPTPAP 932          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: D7FGU3_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.000e-38
Identity = 83/152 (54.61%), Postives = 104/152 (68.42%), Query Frame = 0
Query:    1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDIS--GDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVAT-IPGFDGVGSFRVVTGGTGCDDY-TIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAA 148
             FDYGGEGVGYSDT  GN GG FRP+E+VDIS  GD  Y+V W+R GE+LRYT++V +  S   F+F V++     D  G+FRVVTGG GCDD    DLSGLVT P TG W ++ ++E +G  +  L+ G+  +WLCVVS  FNLD F M A
Sbjct:  776 EFDYGGEGVGYSDTDAGNNGGQFRPSENVDISINGD-GYNVGWMRSGEYLRYTIDVTEDISDLGFSFSVSSPYTNIDERGTFRVVTGGGGCDDDDATDLSGLVTAPYTGAWGSYETVEANGGQS--LATGQTEIWLCVVSAGFNLDYFDMGA 924          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A6H5JFJ7_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.410e-36
Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 0
Query:    1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDIS--GDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVAT-IPGFDGVGSFRVVTGGTGCDDY-TIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAA 148
             FDYGGEGVGYSDT  GN GG FR +E+VDIS  GD  Y+V W+  GE+LRYT++V +  S   F+F V++     D  G+FRVVTGG GCDD    DLSGLVT P TG W ++ ++E +G  +  L+ G+  +WLCVVS  FNLD F + A
Sbjct:  596 EFDYGGEGVGYSDTDAGNNGGQFRTSENVDISINGD-GYNVGWMSSGEYLRYTIDVTEDISDLGFSFSVSSPYTNVDERGTFRVVTGGGGCDDDDATDLSGLVTAPYTGAWGSYETVEANGGQS--LATGQTEIWLCVVSAGFNLDYFDIGA 744          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A2V8BZS8_9BACT (CBM6 domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8BZS8_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 7.320e-17
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 0
Query:    2 FDYGGEGVGYSDTTPGNTGGAFRPNE-DVDISGDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSI 113
            FD GGE V Y DTTPGN+GGA+R  + D++ S D    V WI  GE+L YTVNV  AA ++  TF+VA++      G+F +   G       +++SG +T+P TG W+ + S+
Sbjct:   89 FDNGGESVAYHDTTPGNSGGAYRSTDVDLEPSTDGGNDVGWIAAGEWLNYTVNVS-AAGSYVVTFRVASL---GQGGTFHLEMNG-------VNVSGAITIPDTGSWQNWQSV 190          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A3N5XWJ2_9BACT (Carbohydrate-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5XWJ2_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 1.790e-16
Identity = 61/145 (42.07%), Postives = 75/145 (51.72%), Query Frame = 0
Query:    1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN-YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTID--LSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLD 142
             FD GG GV YSDT+P N GGA+RP E VD+ G    Y+V WI  GE+L Y+VNV  A S +    +VA+            +  GTG    TI    S  V VPSTG W T+  I ISG     L+ G   L +  V   +NLD
Sbjct:  416 NFDNGGSGVAYSDTSPANLGGAYRPTEAVDLEGSAGRYNVGWIDTGEWLLYSVNVGTAGS-YRARLRVAS-----------ALAAGTGQVSLTIGGVTSAAVGVPSTGSWSTYRDITISGLS---LTAGSQFLRVNSVHSGWNLD 545          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A2V8B565_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8B565_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 6.450e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 0
Query:    2 FDYGGEGVGYSDTTPGNTGGAFRPNE-DVDISGDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSI 113
            FD GGE V Y DTTPGN+GGA+R  + D++ S D    V WI  GE+L YTVNV  AA ++  TF+VA++      G+F +   G       +++SG +T+P TG W+ + S+
Sbjct:  238 FDNGGESVAYHDTTPGNSGGAYRSTDVDLEPSTDGGNDVGWIAAGEWLNYTVNVS-AAGSYVVTFRVASL---GQGGTFHLEMNG-------VNVSGAITIPDTGSWQNWQSV 339          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A847VAA1_9EURY (Carbohydrate-binding protein n=1 Tax=Methanospirillum sp. TaxID=45200 RepID=A0A847VAA1_9EURY)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-15
Identity = 64/171 (37.43%), Postives = 89/171 (52.05%), Query Frame = 0
Query:    5 GGEGVGYSDTTPGNTGGAFRPNEDVDISGDRNY-HVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAAASTSPPSPSPEVDTSAAFGGIPASIP 174
            GGEGVGY DTTPGN+GGA+R ++DVDI       +V WIR GE+L YT  V  A + +  T +VA+    +   +  V+  G          +  + VP+TG + TF ++++       LSVG  TL L       NLD    A   T+PP+P P    S  F  +PA+ P
Sbjct:  118 GGEGVGYHDTTPGNSGGAYR-SDDVDIETAGGVTNVGWIRNGEWLHYTTTVANAGT-YTMTARVASP---NSGRTIAVLVDGA--------QAATIAVPNTGSFATFRTVQVPVT----LSVGSHTLKLTFQGDGQNLDWIAFAVGGTTPPTPEPSAGAS--FVAVPATAP 269          
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A7S6MYE3_9BACT (Family 16 glycosylhydrolase n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=A0A7S6MYE3_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 2.900e-15
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 0
Query:    1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN----YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLD 142
             FD GG GV Y D T GNTGG +R  + VDI    +    Y++ W+  GE+L Y++    AA A  +TF + T       G+ RV       DD  ID+SGL+TVP TG+W+T++++    K    L+ G  TL + + S  +N++
Sbjct:  375 NFDLGGNGVAYYDATAGNTGGVYRALDAVDIQNCTDAGGGYNIGWVSAGEWLEYSIY---AAEAGNYTFTLRTASAAAATGTMRVYI-----DD--IDVSGLLTVPLTGNWQTWANVS---KPNIPLTQGNHTLKIFIASGEYNIN 507          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEN4_9PHAE6.710e-7874.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL13_ECTSI3.900e-5178.45Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FTA2_ECTSI6.190e-4050.94Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FGU3_ECTSI1.000e-3854.61Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JFJ7_9PHAE3.410e-3652.63Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
A0A2V8BZS8_9BACT7.320e-1742.48CBM6 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A3N5XWJ2_9BACT1.790e-1642.07Carbohydrate-binding protein (Fragment) n=1 Tax=Ac... [more]
A0A2V8B565_9BACT6.450e-1642.48Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A847VAA1_9EURY2.580e-1537.43Carbohydrate-binding protein n=1 Tax=Methanospiril... [more]
A0A7S6MYE3_9BACT2.900e-1536.99Family 16 glycosylhydrolase n=1 Tax=Ignavibacteria... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005084Carbohydrate binding module family 6PFAMPF03422CBM_6coord: 34..146
e-value: 6.6E-8
score: 32.9
IPR008979Galactose-binding-like domain superfamilyGENE3D2.60.120.260coord: 1..150
e-value: 9.6E-25
score: 89.4
IPR008979Galactose-binding-like domain superfamilySUPERFAMILY49785Galactose-binding domain-likecoord: 34..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig104contigC-linearis_contig104:112584..114532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig104.872.1mRNA_C-linearis_contig104.872.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig104 112584..114532 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig104.872.1 ID=prot_C-linearis_contig104.872.1|Name=mRNA_C-linearis_contig104.872.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp
RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRNYHVAWIREGEFLRY
TVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVT
VPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAAAS
TSPPSPSPEVDTSAAFGGIPASIP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005084CMB_fam6
IPR008979Galactose-bd-like_sf