mRNA_C-linearis_contig104.872.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE) HSP 1 Score: 248 bits (632), Expect = 6.710e-78 Identity = 130/175 (74.29%), Postives = 141/175 (80.57%), Query Frame = 1 Query: 1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN-YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAAASTSPPSPSPEVDTSAAFGGIPASIP 522 +FD+GGEGV YSDTTPGN+GG FRPNEDVDISG + YHVAWIR EFLRYTVNVEKAASAF FTFQVATIP + GSFRVVTGGTGCDDYT DLSGLV VPSTG W TF+S+ +SG G GL VGRATLWLC+VS +FNLDSFTM A PSPS E + AFGGIPA IP Sbjct: 120 KFDHGGEGVSYSDTTPGNSGGVFRPNEDVDISGGHDDYHVAWIRATEFLRYTVNVEKAASAFDFTFQVATIPSYHDSGSFRVVTGGTGCDDYTSDLSGLVVVPSTGGWGTFASLPVSGGGNNGLGVGRATLWLCIVSSHFNLDSFTMEAVLPPTPSPSHEEE---AFGGIPAVIP 291
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI) HSP 1 Score: 185 bits (470), Expect = 3.900e-51 Identity = 91/116 (78.45%), Postives = 99/116 (85.34%), Query Frame = 1 Query: 1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN-YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEI 345 +FD+GGEGV YSDTTPGN+GG FRPNEDVDISG + YHVAWIR EFLRYTVNVEKAASAF FTFQVATIP + GSFRVVTGGTGCDDYT DLSGLV VPSTG W TF+S+ + Sbjct: 868 KFDHGGEGVSYSDTTPGNSGGVFRPNEDVDISGGHDDYHVAWIRATEFLRYTVNVEKAASAFDFTFQVATIPSYHDSGSFRVVTGGTGCDDYTTDLSGLVVVPSTGGWGTFASLPV 983
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: D7FTA2_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA2_ECTSI) HSP 1 Score: 153 bits (387), Expect = 6.190e-40 Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = 1 Query: 4 FDYGGEGVGYSDTTPGNTGGAFRPNEDVDIS--GDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAAASTSPPSPSP 474 FD GGEGVGY DTT GN+GGA R EDVD+ G Y+V W+ E E+L YTV V + F F F VA D G +VV+GGTGC DY DLSG+V V STG W TF + +S G+GGL G +W+C+++ FN+DSFTM A T P+P+P Sbjct: 776 FDSGGEGVGYHDTTAGNSGGALRRTEDVDVKAGGAGGYYVGWVAESEYLIYTVEVTEDVDEFDFEFVVAAPS--DLGGQMQVVSGGTGCSDYVTDLSGVVEVASTGSWATFETKSLSAGGSGGLEAGSHIIWICIIAPGFNIDSFTMTAHVTKGPTPAP 932
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: D7FGU3_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI) HSP 1 Score: 150 bits (378), Expect = 1.000e-38 Identity = 83/152 (54.61%), Postives = 104/152 (68.42%), Query Frame = 1 Query: 1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDIS--GDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVAT-IPGFDGVGSFRVVTGGTGCDDY-TIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAA 444 FDYGGEGVGYSDT GN GG FRP+E+VDIS GD Y+V W+R GE+LRYT++V + S F+F V++ D G+FRVVTGG GCDD DLSGLVT P TG W ++ ++E +G + L+ G+ +WLCVVS FNLD F M A Sbjct: 776 EFDYGGEGVGYSDTDAGNNGGQFRPSENVDISINGD-GYNVGWMRSGEYLRYTIDVTEDISDLGFSFSVSSPYTNIDERGTFRVVTGGGGCDDDDATDLSGLVTAPYTGAWGSYETVEANGGQS--LATGQTEIWLCVVSAGFNLDYFDMGA 924
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A6H5JFJ7_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE) HSP 1 Score: 142 bits (359), Expect = 3.410e-36 Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 1 Query: 1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDIS--GDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVAT-IPGFDGVGSFRVVTGGTGCDDY-TIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAA 444 FDYGGEGVGYSDT GN GG FR +E+VDIS GD Y+V W+ GE+LRYT++V + S F+F V++ D G+FRVVTGG GCDD DLSGLVT P TG W ++ ++E +G + L+ G+ +WLCVVS FNLD F + A Sbjct: 596 EFDYGGEGVGYSDTDAGNNGGQFRTSENVDISINGD-GYNVGWMSSGEYLRYTIDVTEDISDLGFSFSVSSPYTNVDERGTFRVVTGGGGCDDDDATDLSGLVTAPYTGAWGSYETVEANGGQS--LATGQTEIWLCVVSAGFNLDYFDIGA 744
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A2V8BZS8_9BACT (CBM6 domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8BZS8_9BACT) HSP 1 Score: 84.7 bits (208), Expect = 7.320e-17 Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 4 FDYGGEGVGYSDTTPGNTGGAFRPNE-DVDISGDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSI 339 FD GGE V Y DTTPGN+GGA+R + D++ S D V WI GE+L YTVNV AA ++ TF+VA++ G+F + G +++SG +T+P TG W+ + S+ Sbjct: 89 FDNGGESVAYHDTTPGNSGGAYRSTDVDLEPSTDGGNDVGWIAAGEWLNYTVNVS-AAGSYVVTFRVASL---GQGGTFHLEMNG-------VNVSGAITIPDTGSWQNWQSV 190
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A3N5XWJ2_9BACT (Carbohydrate-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5XWJ2_9BACT) HSP 1 Score: 86.3 bits (212), Expect = 1.790e-16 Identity = 61/145 (42.07%), Postives = 75/145 (51.72%), Query Frame = 1 Query: 1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN-YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTID--LSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLD 426 FD GG GV YSDT+P N GGA+RP E VD+ G Y+V WI GE+L Y+VNV A S + +VA+ + GTG TI S V VPSTG W T+ I ISG L+ G L + V +NLD Sbjct: 416 NFDNGGSGVAYSDTSPANLGGAYRPTEAVDLEGSAGRYNVGWIDTGEWLLYSVNVGTAGS-YRARLRVAS-----------ALAAGTGQVSLTIGGVTSAAVGVPSTGSWSTYRDITISGLS---LTAGSQFLRVNSVHSGWNLD 545
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A2V8B565_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8B565_9BACT) HSP 1 Score: 84.7 bits (208), Expect = 6.450e-16 Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 4 FDYGGEGVGYSDTTPGNTGGAFRPNE-DVDISGDRNYHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSI 339 FD GGE V Y DTTPGN+GGA+R + D++ S D V WI GE+L YTVNV AA ++ TF+VA++ G+F + G +++SG +T+P TG W+ + S+ Sbjct: 238 FDNGGESVAYHDTTPGNSGGAYRSTDVDLEPSTDGGNDVGWIAAGEWLNYTVNVS-AAGSYVVTFRVASL---GQGGTFHLEMNG-------VNVSGAITIPDTGSWQNWQSV 339
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A847VAA1_9EURY (Carbohydrate-binding protein n=1 Tax=Methanospirillum sp. TaxID=45200 RepID=A0A847VAA1_9EURY) HSP 1 Score: 82.0 bits (201), Expect = 2.580e-15 Identity = 64/171 (37.43%), Postives = 89/171 (52.05%), Query Frame = 1 Query: 13 GGEGVGYSDTTPGNTGGAFRPNEDVDISGDRNY-HVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLDSFTMAAASTSPPSPSPEVDTSAAFGGIPASIP 522 GGEGVGY DTTPGN+GGA+R ++DVDI +V WIR GE+L YT V A + + T +VA+ + + V+ G + + VP+TG + TF ++++ LSVG TL L NLD A T+PP+P P S F +PA+ P Sbjct: 118 GGEGVGYHDTTPGNSGGAYR-SDDVDIETAGGVTNVGWIRNGEWLHYTTTVANAGT-YTMTARVASP---NSGRTIAVLVDGA--------QAATIAVPNTGSFATFRTVQVPVT----LSVGSHTLKLTFQGDGQNLDWIAFAVGGTTPPTPEPSAGAS--FVAVPATAP 269
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Match: A0A7S6MYE3_9BACT (Family 16 glycosylhydrolase n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=A0A7S6MYE3_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 2.900e-15 Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 1 RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRN----YHVAWIREGEFLRYTVNVEKAASAFAFTFQVATIPGFDGVGSFRVVTGGTGCDDYTIDLSGLVTVPSTGDWETFSSIEISGKGTGGLSVGRATLWLCVVSRNFNLD 426 FD GG GV Y D T GNTGG +R + VDI + Y++ W+ GE+L Y++ AA A +TF + T G+ RV DD ID+SGL+TVP TG+W+T++++ K L+ G TL + + S +N++ Sbjct: 375 NFDLGGNGVAYYDATAGNTGGVYRALDAVDIQNCTDAGGGYNIGWVSAGEWLEYSIY---AAEAGNYTFTLRTASAAAATGTMRVYI-----DD--IDVSGLLTVPLTGNWQTWANVS---KPNIPLTQGNHTLKIFIASGEYNIN 507 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.872.1 >prot_C-linearis_contig104.872.1 ID=prot_C-linearis_contig104.872.1|Name=mRNA_C-linearis_contig104.872.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=174bp RFDYGGEGVGYSDTTPGNTGGAFRPNEDVDISGDRNYHVAWIREGEFLRYback to top mRNA from alignment at C-linearis_contig104:112584..114532- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.872.1 ID=mRNA_C-linearis_contig104.872.1|Name=mRNA_C-linearis_contig104.872.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1949bp|location=Sequence derived from alignment at C-linearis_contig104:112584..114532- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:112584..114532- >mRNA_C-linearis_contig104.872.1 ID=mRNA_C-linearis_contig104.872.1|Name=mRNA_C-linearis_contig104.872.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at C-linearis_contig104:112584..114532- (Chordaria linearis ClinC8C monoicous)back to top |