prot_C-linearis_contig103.852.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.852.1
Unique Nameprot_C-linearis_contig103.852.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length365
Homology
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 1.170e-125
Identity = 249/396 (62.88%), Postives = 286/396 (72.22%), Query Frame = 0
Query:    2 GSATQREDAAAQAEFLRAFSSPRGDADGEDDGVDEHKHRVLLHVEASLNEGALTLVNAGQPCLRIIFDLKAELQKKKTDWTLELGLGALQAFGLAGQGARATTLLTRRTWRPHAA-GSGEGGMIQIGDFQVWKSGGVVVDYETEDP-------------------------VRAPPLSPRASSPRGVLSAGQTA-----LGGXXXXXXXSVVTVKVVFAPHQLMHSRTTVDQLASMLATRDMRLLASAAQSKISRLQRATQSSFLHALGSEQRLEVTADIHAPLLVLPDELEEKSRSNTLLVLDLGHIAFRRDDTPARREEDQSAESSPRTSIPPDPLLAASPFSSD-PSTGNRGASGRDAFGPETLADDPMVAAEGGSEDVALNDWRLDVSGVQV 365
            G ATQREDAAAQAEFLRAFSSP GDA+G++DG DE K+RVL  VEASLNEGALTLVNAGQPCLRIIFDLKA+LQK+KTDW LELGLGALQAFGLAGQGARATTLLTRRTWRP  A G G+ GMIQIGDFQVWKSGG++V+Y+ EDP                         + +P +SPRA S  G    G +A      G        +VVTVKVVFAPHQLMH+R  VDQ+ SM ATRDMRLLASAAQSKISRL+RAT+SSFLHALGS +R+EVTADIHAPL+VLP++LE++SRS+ LLVLDLGHIAFRRDD   RR+   + E+ P  S    PL +   F  D PS+   G S      P  L  DP+VA     ED+A +DW LDV+GVQV
Sbjct:  611 GGATQREDAAAQAEFLRAFSSPGGDAEGDNDGGDEQKNRVLFDVEASLNEGALTLVNAGQPCLRIIFDLKADLQKQKTDWRLELGLGALQAFGLAGQGARATTLLTRRTWRPPKADGGGDAGMIQIGDFQVWKSGGIIVEYQGEDPDNAATNKGGGRSXXXSTPAGPARKAIASPLVSPRAVSSSGGDGGGVSADQADSAGRWGGGGSGAVVTVKVVFAPHQLMHNRACVDQVTSMFATRDMRLLASAAQSKISRLKRATRSSFLHALGSSKRVEVTADIHAPLVVLPEDLEDRSRSS-LLVLDLGHIAFRRDDA-LRRD---AVETPPGDS----PLASPPVFDVDVPSSSVEGVSA-----PGLLTADPLVANV--PEDIAQDDWLLDVTGVQV 990          
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 3.920e-91
Identity = 187/289 (64.71%), Postives = 205/289 (70.93%), Query Frame = 0
Query:    2 GSATQREDAAAQAEFLRAFSSPRGDADGEDDGVDEHKHR------------VLLHVEASLNEGALTLVNAGQPCLRIIFDLKAELQKKKTDWTLELGLGALQAFGLAGQGARATTLLTRRTWRP-HAAGSGEGGMIQIGDFQVWKSGGVVVDYETEDPVRA------------------------PPLSPRASSPRGVLSAGQTALGGXXXXXXXS-------VVTVKVVFAPHQLMHSRTTVDQLASMLATRDMRLLASAAQSKISRLQRATQSSFLHALGSEQRLEV 246
            G ATQREDAAA AEFLRAFSS  GDA+G++DG DEHK R            VL  VEASLNEGALTLVNAGQPCLRIIFDLKA+L K+KTDW LELGLGALQAFGLAGQGARATTLLTRRTWRP  A G G+ GMIQIGDFQVWKSGG++V+Y+  DP  A                        P +SPRA S              XXXXXXX        VVTVKVVFAPHQLMH+R  VDQ+ SM ATRDMRLLASAAQSKISRL+RAT+SSF+HALGS +R+EV
Sbjct:  579 GGATQREDAAAHAEFLRAFSSAGGDAEGDNDGGDEHKSRWEMREAVSHLTRVLFDVEASLNEGALTLVNAGQPCLRIIFDLKADLVKQKTDWRLELGLGALQAFGLAGQGARATTLLTRRTWRPPKAVGGGDAGMIQIGDFQVWKSGGIIVEYQRVDPDNAASNEGGGRSSSSTPAGPARKALASPLVSPRAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVTVKVVFAPHQLMHNRPCVDQVTSMFATRDMRLLASAAQSKISRLKRATRSSFMHALGSSKRVEV 867          
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.530e-5
Identity = 46/98 (46.94%), Postives = 55/98 (56.12%), Query Frame = 0
Query:  270 LLVLDLGHIAFRRDDTPARREEDQSAESSPRTSIPP--DPLLAASPFSSDPSTGNRGASGRDAFGPETLADDPMVAAEGGSEDVALNDWRLDVSGVQV 365
            LLVLDLGHIAFRRDD P RR+  ++       ++PP  D  L        PS+   G S      PE L  DP+VA     EDVA +DW LDV+GVQV
Sbjct:    9 LLVLDLGHIAFRRDD-PLRRDAIENPPGDSPLALPPVIDVDL--------PSSSVEGLSA-----PELLTADPLVADA--PEDVAQDDWLLDVTGVQV 90          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF5_ECTSI1.170e-12562.88FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6C3_9PHAE3.920e-9164.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYL2_9PHAE4.530e-546.94FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031642VPS13, repeated coiled regionPFAMPF16910VPS13_mid_rptcoord: 184..293
e-value: 2.1E-11
score: 43.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:479166..483169 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.852.1mRNA_C-linearis_contig103.852.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 479166..483169 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.852.1 ID=prot_C-linearis_contig103.852.1|Name=mRNA_C-linearis_contig103.852.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=365bp
GGSATQREDAAAQAEFLRAFSSPRGDADGEDDGVDEHKHRVLLHVEASLN
EGALTLVNAGQPCLRIIFDLKAELQKKKTDWTLELGLGALQAFGLAGQGA
RATTLLTRRTWRPHAAGSGEGGMIQIGDFQVWKSGGVVVDYETEDPVRAP
PLSPRASSPRGVLSAGQTALGGGGGGGSGSVVTVKVVFAPHQLMHSRTTV
DQLASMLATRDMRLLASAAQSKISRLQRATQSSFLHALGSEQRLEVTADI
HAPLLVLPDELEEKSRSNTLLVLDLGHIAFRRDDTPARREEDQSAESSPR
TSIPPDPLLAASPFSSDPSTGNRGASGRDAFGPETLADDPMVAAEGGSED
VALNDWRLDVSGVQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031642VPS13_mid_rpt