mRNA_C-linearis_contig103.852.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 1.170e-125 Identity = 249/396 (62.88%), Postives = 286/396 (72.22%), Query Frame = 1 Query: 4 GSATQREDAAAQAEFLRAFSSPRGDADGEDDGVDEHKHRVLLHVEASLNEGALTLVNAGQPCLRIIFDLKAELQKKKTDWTLELGLGALQAFGLAGQGARATTLLTRRTWRPHAA-GSGEGGMIQIGDFQVWKSGGVVVDYETEDP-------------------------VRAPPLSPRASSPRGVLSAGQTA-----LGGXXXXXXXSVVTVKVVFAPHQLMHSRTTVDQLASMLATRDMRLLASAAQSKISRLQRATQSSFLHALGSEQRLEVTADIHAPLLVLPDELEEKSRSNTLLVLDLGHIAFRRDDTPARREEDQSAESSPRTSIPPDPLLAASPFSSD-PSTGNRGASGRDAFGPETLADDPMVAAEGGSEDVALNDWRLDVSGVQV 1095
G ATQREDAAAQAEFLRAFSSP GDA+G++DG DE K+RVL VEASLNEGALTLVNAGQPCLRIIFDLKA+LQK+KTDW LELGLGALQAFGLAGQGARATTLLTRRTWRP A G G+ GMIQIGDFQVWKSGG++V+Y+ EDP + +P +SPRA S G G +A G +VVTVKVVFAPHQLMH+R VDQ+ SM ATRDMRLLASAAQSKISRL+RAT+SSFLHALGS +R+EVTADIHAPL+VLP++LE++SRS+ LLVLDLGHIAFRRDD RR+ + E+ P S PL + F D PS+ G S P L DP+VA ED+A +DW LDV+GVQV
Sbjct: 611 GGATQREDAAAQAEFLRAFSSPGGDAEGDNDGGDEQKNRVLFDVEASLNEGALTLVNAGQPCLRIIFDLKADLQKQKTDWRLELGLGALQAFGLAGQGARATTLLTRRTWRPPKADGGGDAGMIQIGDFQVWKSGGIIVEYQGEDPDNAATNKGGGRSXXXSTPAGPARKAIASPLVSPRAVSSSGGDGGGVSADQADSAGRWGGGGSGAVVTVKVVFAPHQLMHNRACVDQVTSMFATRDMRLLASAAQSKISRLKRATRSSFLHALGSSKRVEVTADIHAPLVVLPEDLEDRSRSS-LLVLDLGHIAFRRDDA-LRRD---AVETPPGDS----PLASPPVFDVDVPSSSVEGVSA-----PGLLTADPLVANV--PEDIAQDDWLLDVTGVQV 990
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE) HSP 1 Score: 301 bits (770), Expect = 3.920e-91 Identity = 187/289 (64.71%), Postives = 205/289 (70.93%), Query Frame = 1 Query: 4 GSATQREDAAAQAEFLRAFSSPRGDADGEDDGVDEHKHR------------VLLHVEASLNEGALTLVNAGQPCLRIIFDLKAELQKKKTDWTLELGLGALQAFGLAGQGARATTLLTRRTWRP-HAAGSGEGGMIQIGDFQVWKSGGVVVDYETEDPVRA------------------------PPLSPRASSPRGVLSAGQTALGGXXXXXXXS-------VVTVKVVFAPHQLMHSRTTVDQLASMLATRDMRLLASAAQSKISRLQRATQSSFLHALGSEQRLEV 738
G ATQREDAAA AEFLRAFSS GDA+G++DG DEHK R VL VEASLNEGALTLVNAGQPCLRIIFDLKA+L K+KTDW LELGLGALQAFGLAGQGARATTLLTRRTWRP A G G+ GMIQIGDFQVWKSGG++V+Y+ DP A P +SPRA S XXXXXXX VVTVKVVFAPHQLMH+R VDQ+ SM ATRDMRLLASAAQSKISRL+RAT+SSF+HALGS +R+EV
Sbjct: 579 GGATQREDAAAHAEFLRAFSSAGGDAEGDNDGGDEHKSRWEMREAVSHLTRVLFDVEASLNEGALTLVNAGQPCLRIIFDLKADLVKQKTDWRLELGLGALQAFGLAGQGARATTLLTRRTWRPPKAVGGGDAGMIQIGDFQVWKSGGIIVEYQRVDPDNAASNEGGGRSSSSTPAGPARKALASPLVSPRAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVTVKVVFAPHQLMHNRPCVDQVTSMFATRDMRLLASAAQSKISRLKRATRSSFMHALGSSKRVEV 867
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 4.530e-5 Identity = 46/98 (46.94%), Postives = 55/98 (56.12%), Query Frame = 1 Query: 808 LLVLDLGHIAFRRDDTPARREEDQSAESSPRTSIPP--DPLLAASPFSSDPSTGNRGASGRDAFGPETLADDPMVAAEGGSEDVALNDWRLDVSGVQV 1095
LLVLDLGHIAFRRDD P RR+ ++ ++PP D L PS+ G S PE L DP+VA EDVA +DW LDV+GVQV
Sbjct: 9 LLVLDLGHIAFRRDD-PLRRDAIENPPGDSPLALPPVIDVDL--------PSSSVEGLSA-----PELLTADPLVADA--PEDVAQDDWLLDVTGVQV 90 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.852.1 >prot_C-linearis_contig103.852.1 ID=prot_C-linearis_contig103.852.1|Name=mRNA_C-linearis_contig103.852.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=365bp GGSATQREDAAAQAEFLRAFSSPRGDADGEDDGVDEHKHRVLLHVEASLNback to top mRNA from alignment at C-linearis_contig103:479166..483169- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.852.1 ID=mRNA_C-linearis_contig103.852.1|Name=mRNA_C-linearis_contig103.852.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4004bp|location=Sequence derived from alignment at C-linearis_contig103:479166..483169- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:479166..483169- >mRNA_C-linearis_contig103.852.1 ID=mRNA_C-linearis_contig103.852.1|Name=mRNA_C-linearis_contig103.852.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at C-linearis_contig103:479166..483169- (Chordaria linearis ClinC8C monoicous)back to top |