prot_C-linearis_contig103.846.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig103.846.1
Unique Nameprot_C-linearis_contig103.846.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length254
Homology
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BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.770e-38
Identity = 87/119 (73.11%), Postives = 93/119 (78.15%), Query Frame = 0 
Query:    7 GRGDVIRVVLREVEVHAWPPNWRHEVQCPGVRMTVIDDIEGRDMPLLRAEVRSLDMTHESGPGMARHSS----SSAGSRASPQHADSAXXXXXXGIAGLEGT--ITVPVSRTAAACDAQ 119
            GRGDVIR+VLREVEVHAWPPNWRHEVQCPGVR+TVIDD+EGRDMPLLRAEV SLDMTHESGPGMARHS+    +S G       A     XXXX  AG   T  + VPVSRTAAACDAQ
Sbjct: 4065 GRGDVIRLVLREVEVHAWPPNWRHEVQCPGVRVTVIDDLEGRDMPLLRAEVGSLDMTHESGPGMARHSAGDKRASLGKSILATTAGGTSAXXXXRTAGGVDTALLVVPVSRTAAACDAQ 4183
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BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.410e-18
Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 0 
Query:  120 VDYYNATGGRWEPLLERVVAQGDREIVDRRRAPLLGGPATRSIGGRAGGGYQEGEEG----ETCSVVRLSCFEEDVK 192
            VDYYNATGGRWEPLLERVVAQGDR IV RRR   +      ++ G  GGG  +GEEG    E+CSVVRLSCFEEDVK
Sbjct:    2 VDYYNATGGRWEPLLERVVAQGDRAIVTRRR---VAAQDPNTVTGVVGGG--QGEEGXXXXESCSVVRLSCFEEDVK 73
[Close]
BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.380e-5
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0 
Query:    7 GRGDVIRVVLREVEVHAWPPNWRHEV 32
            G GD+IR+VLREVEVHAWPPNWRHEV
Sbjct: 3642 GTGDMIRLVLREVEVHAWPPNWRHEV 3667
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF5_ECTSI2.770e-3873.11FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FMF6_ECTSI7.410e-1867.53SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JYL2_9PHAE1.380e-588.46FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig103contigC-linearis_contig103:453241..455979 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig103.846.1mRNA_C-linearis_contig103.846.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig103 453240..455979 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig103.846.1 ID=prot_C-linearis_contig103.846.1|Name=mRNA_C-linearis_contig103.846.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=254bp
GGAGRGGRGDVIRVVLREVEVHAWPPNWRHEVQCPGVRMTVIDDIEGRDM
PLLRAEVRSLDMTHESGPGMARHSSSSAGSRASPQHADSAAGGGGGGIAG
LEGTITVPVSRTAAACDAQVDYYNATGGRWEPLLERVVAQGDREIVDRRR
APLLGGPATRSIGGRAGGGYQEGEEGETCSVVRLSCFEEDVKVNVTHAAL
DVVLRALRDYKNIGGDPSGGVVVSGKGDGSNGASSVSAAVGKAVSTPALP
ATST
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