mRNA_C-linearis_contig103.846.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 152 bits (384), Expect = 2.770e-38 Identity = 87/119 (73.11%), Postives = 93/119 (78.15%), Query Frame = 1 Query: 19 GRGDVIRVVLREVEVHAWPPNWRHEVQCPGVRMTVIDDIEGRDMPLLRAEVRSLDMTHESGPGMARHSS----SSAGSRASPQHADSAXXXXXXGIAGLEGT--ITVPVSRTAAACDAQ 357
GRGDVIR+VLREVEVHAWPPNWRHEVQCPGVR+TVIDD+EGRDMPLLRAEV SLDMTHESGPGMARHS+ +S G A XXXX AG T + VPVSRTAAACDAQ
Sbjct: 4065 GRGDVIRLVLREVEVHAWPPNWRHEVQCPGVRVTVIDDLEGRDMPLLRAEVGSLDMTHESGPGMARHSAGDKRASLGKSILATTAGGTSAXXXXRTAGGVDTALLVVPVSRTAAACDAQ 4183
BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 7.410e-18 Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 1 Query: 358 VDYYNATGGRWEPLLERVVAQGDREIVDRRRAPLLGGPATRSIGGRAGGGYQEGEEG----ETCSVVRLSCFEEDVK 576
VDYYNATGGRWEPLLERVVAQGDR IV RRR + ++ G GGG +GEEG E+CSVVRLSCFEEDVK
Sbjct: 2 VDYYNATGGRWEPLLERVVAQGDRAIVTRRR---VAAQDPNTVTGVVGGG--QGEEGXXXXESCSVVRLSCFEEDVK 73
BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 1.380e-5 Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1 Query: 19 GRGDVIRVVLREVEVHAWPPNWRHEV 96
G GD+IR+VLREVEVHAWPPNWRHEV
Sbjct: 3642 GTGDMIRLVLREVEVHAWPPNWRHEV 3667 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.846.1 >prot_C-linearis_contig103.846.1 ID=prot_C-linearis_contig103.846.1|Name=mRNA_C-linearis_contig103.846.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=254bp GGAGRGGRGDVIRVVLREVEVHAWPPNWRHEVQCPGVRMTVIDDIEGRDMback to top mRNA from alignment at C-linearis_contig103:453240..455979- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.846.1 ID=mRNA_C-linearis_contig103.846.1|Name=mRNA_C-linearis_contig103.846.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2740bp|location=Sequence derived from alignment at C-linearis_contig103:453240..455979- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:453240..455979- >mRNA_C-linearis_contig103.846.1 ID=mRNA_C-linearis_contig103.846.1|Name=mRNA_C-linearis_contig103.846.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at C-linearis_contig103:453240..455979- (Chordaria linearis ClinC8C monoicous)back to top |