prot_C-linearis_contig102.769.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig102.769.1
Unique Name	prot_C-linearis_contig102.769.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	85

Homology

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BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.230e-34
Identity = 61/84 (72.62%), Postives = 66/84 (78.57%), Query Frame = 0

Query:    3 NGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            NGYEQ + DPCVFRKVVD EV+ LIVIYVDDI  A  E ER  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:  102 NGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGEREVLFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 185

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.020e-34
Identity = 62/84 (73.81%), Postives = 67/84 (79.76%), Query Frame = 0

Query:    3 NGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E ER  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:   33 NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 116

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.870e-34
Identity = 62/84 (73.81%), Postives = 66/84 (78.57%), Query Frame = 0

Query:    3 NGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E ER  LFASL K FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:   33 NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 116

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.060e-33
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 0

Query:    1 MANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            ++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ +  E ER  L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct:   71 ISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 156

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.150e-33
Identity = 62/84 (73.81%), Postives = 67/84 (79.76%), Query Frame = 0

Query:    3 NGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E ER  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:   33 NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAY 116

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.920e-33
Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = 0

Query:    3 NGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            +GYEQ +ADPCVFRK+VD +V+ +IVIYVDDI++ G E E   L  SL+K  PVKDLGECTWYDGCAIER++ELGTTTLSQK+Y
Sbjct:  905 SGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAY 988

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.960e-33
Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = 0

Query:    3 NGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            +GYEQ +ADPCVFRK+VD +V+ +IVIYVDDI++ G E E   L  SL+K  PVKDLGECTWYDGCAIER++ELGTTTLSQK+Y
Sbjct: 1458 SGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAY 1541

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 9.690e-33
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 0

Query:    1 MANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            ++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ +  E ER  L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct:  284 ISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 369

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 9.990e-33
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 0

Query:    1 MANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            ++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ +  E ER  L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct:  540 ISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 625

[Close]

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.070e-32
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 0

Query:    3 NGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 85
            NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E +R  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:  102 NGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAY 185

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot

BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K738_9PHAE	1.230e-34	72.62	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JE75_9PHAE	3.020e-34	73.81	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KW89_9PHAE	5.870e-34	73.81	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KCN6_9PHAE	1.060e-33	69.77	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JWY8_9PHAE	2.150e-33	73.81	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JKS3_9PHAE	5.920e-33	70.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L175_9PHAE	5.960e-33	70.24	Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KR39_9PHAE	9.690e-33	69.77	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JHI8_9PHAE	9.990e-33	69.77	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JXU1_9PHAE	1.070e-32	72.62	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..85 e-value: 2.5E-8 score: 33.9

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig102	contig	C-linearis_contig102:109269..109523 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig102.769.1	mRNA_C-linearis_contig102.769.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig102 108915..109523 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig102.769.1 ID=prot_C-linearis_contig102.769.1|Name=mRNA_C-linearis_contig102.769.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
MANGYEQSKADPCVFRKVVDEEVILIVIYVDDILFAGPENERRGLFASLQ
KRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2