mRNA_C-linearis_contig102.769.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE) HSP 1 Score: 162 bits (411), Expect = 4.700e-47 Identity = 84/123 (68.29%), Postives = 90/123 (73.17%), Query Frame = 1 Query: 259 FSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
F G S KV K ER KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDI A E ER LFASL K+FPVKDLGECTWYDGCAI +VE G T LSQ +Y
Sbjct: 63 FPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVENGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGEREVLFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 185
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE) HSP 1 Score: 160 bits (404), Expect = 4.850e-45 Identity = 83/115 (72.17%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 283 SKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
S KV K ER KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A E ER LFASL K+FPVKDLGECTWYDGCAI +VE G T LSQ +Y
Sbjct: 2 SGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 116
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE) HSP 1 Score: 162 bits (411), Expect = 7.720e-45 Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1 Query: 232 RTKDTPGVWFSSGVAFFSKKVKKG--ERKQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
R D GVW V KV++ KQSGREWGFEAADAL++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ + E ER L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct: 33 RLPDGCGVWTGKAV-----KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 156
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE) HSP 1 Score: 159 bits (402), Expect = 9.430e-45 Identity = 83/115 (72.17%), Postives = 88/115 (76.52%), Query Frame = 1 Query: 283 SKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
S KV K ER KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A E ER LFASL K FPVKDLGECTWYDGCAI +VE G T LSQ +Y
Sbjct: 2 SGKVVKVERALYRLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 116
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 162 bits (410), Expect = 1.020e-44 Identity = 84/123 (68.29%), Postives = 92/123 (74.80%), Query Frame = 1 Query: 259 FSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
F G + S KV K ER KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A E +R LFASL K+FPVKDLGECTWYDGCAI +VE G T LSQ +Y
Sbjct: 63 FPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAY 185
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE) HSP 1 Score: 159 bits (403), Expect = 5.000e-44 Identity = 83/115 (72.17%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 283 SKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
S KV K ER KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A E ER LFASL K+FPVKDLGECTWYDGCAI +VE G T LSQ +Y
Sbjct: 2 SGKVVKVERALYRLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAY 116
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JNU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU5_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.690e-43 Identity = 87/130 (66.92%), Postives = 93/130 (71.54%), Query Frame = 1 Query: 238 KDTPGVWFSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
KD F G S KV K ER KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A E ER LFASL K+FPVKDLGECTWYDGCAI +VE G T LSQ +Y
Sbjct: 381 KDVMCSKFPKGCGGMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 510
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JPM8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPM8_9PHAE) HSP 1 Score: 164 bits (414), Expect = 3.680e-43 Identity = 85/132 (64.39%), Postives = 94/132 (71.21%), Query Frame = 1 Query: 232 RTKDTPGVWFSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
+T+ G WF G S KV ER KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVDEEV+ LIVIYVDDIL A E E +FASL K+FPVKDLGECT YDGCAI +VE G T LSQ +Y
Sbjct: 508 KTRSIGGNWFPEGCGSMSGKVVNVERALHGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDEEVVGLIVIYVDDILVAADEGEGEEVFASLNKKFPVKDLGECTCYDGCAIAMDVENGITKLSQTAY 639
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE) HSP 1 Score: 162 bits (411), Expect = 4.210e-43 Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1 Query: 232 RTKDTPGVWFSSGVAFFSKKVKKG--ERKQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
R D GVW V KV++ KQSGREWGFEAADAL++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ + E ER L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct: 246 RLPDGCGVWTGKAV-----KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 369
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE) HSP 1 Score: 162 bits (411), Expect = 4.790e-43 Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1 Query: 232 RTKDTPGVWFSSGVAFFSKKVKKG--ERKQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
R D GVW V KV++ KQSGREWGFEAADAL++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ + E ER L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct: 502 RLPDGCGVWTGKAV-----KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 625 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.769.1 >prot_C-linearis_contig102.769.1 ID=prot_C-linearis_contig102.769.1|Name=mRNA_C-linearis_contig102.769.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp MANGYEQSKADPCVFRKVVDEEVILIVIYVDDILFAGPENERRGLFASLQback to top mRNA from alignment at C-linearis_contig102:108915..109523+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.769.1 ID=mRNA_C-linearis_contig102.769.1|Name=mRNA_C-linearis_contig102.769.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=609bp|location=Sequence derived from alignment at C-linearis_contig102:108915..109523+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:108915..109523+ >mRNA_C-linearis_contig102.769.1 ID=mRNA_C-linearis_contig102.769.1|Name=mRNA_C-linearis_contig102.769.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig102:108915..109523+ (Chordaria linearis ClinC8C monoicous)back to top |