mRNA_C-linearis_contig102.769.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig102.769.1
Unique NamemRNA_C-linearis_contig102.769.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 4.700e-47
Identity = 84/123 (68.29%), Postives = 90/123 (73.17%), Query Frame = 1 
Query:  259 FSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            F  G    S KV K ER     KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDI  A  E ER  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:   63 FPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVENGYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGEREVLFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 185
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 4.850e-45
Identity = 83/115 (72.17%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:  283 SKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            S KV K ER     KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E ER  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:    2 SGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 116
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 7.720e-45
Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1 
Query:  232 RTKDTPGVWFSSGVAFFSKKVKKG--ERKQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            R  D  GVW    V     KV++     KQSGREWGFEAADAL++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ +  E ER  L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct:   33 RLPDGCGVWTGKAV-----KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 156
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.430e-45
Identity = 83/115 (72.17%), Postives = 88/115 (76.52%), Query Frame = 1 
Query:  283 SKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            S KV K ER     KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E ER  LFASL K FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:    2 SGKVVKVERALYRLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 116
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.020e-44
Identity = 84/123 (68.29%), Postives = 92/123 (74.80%), Query Frame = 1 
Query:  259 FSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            F  G +  S KV K ER     KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E +R  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:   63 FPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAY 185
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.000e-44
Identity = 83/115 (72.17%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:  283 SKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            S KV K ER     KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E ER  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:    2 SGKVVKVERALYRLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAY 116
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JNU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU5_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.690e-43
Identity = 87/130 (66.92%), Postives = 93/130 (71.54%), Query Frame = 1 
Query:  238 KDTPGVWFSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            KD     F  G    S KV K ER     KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVD EV+ LIVIYVDDIL A  E ER  LFASL K+FPVKDLGECTWYDGCAI  +VE G T LSQ +Y
Sbjct:  381 KDVMCSKFPKGCGGMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAY 510
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JPM8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPM8_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.680e-43
Identity = 85/132 (64.39%), Postives = 94/132 (71.21%), Query Frame = 1 
Query:  232 RTKDTPGVWFSSGVAFFSKKVKKGER-----KQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            +T+   G WF  G    S KV   ER     KQSGREWGFEAADAL+ NGYEQ + DPCVFRKVVDEEV+ LIVIYVDDIL A  E E   +FASL K+FPVKDLGECT YDGCAI  +VE G T LSQ +Y
Sbjct:  508 KTRSIGGNWFPEGCGSMSGKVVNVERALHGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDEEVVGLIVIYVDDILVAADEGEGEEVFASLNKKFPVKDLGECTCYDGCAIAMDVENGITKLSQTAY 639
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 4.210e-43
Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1 
Query:  232 RTKDTPGVWFSSGVAFFSKKVKKG--ERKQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            R  D  GVW    V     KV++     KQSGREWGFEAADAL++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ +  E ER  L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct:  246 RLPDGCGVWTGKAV-----KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 369
[Close]
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 4.790e-43
Identity = 83/129 (64.34%), Postives = 96/129 (74.42%), Query Frame = 1 
Query:  232 RTKDTPGVWFSSGVAFFSKKVKKG--ERKQSGREWGFEAADALMANGYEQSKADPCVFRKVVDEEVI-LIVIYVDDILFAGPENERRGLFASLQKRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY 609
            R  D  GVW    V     KV++     KQSGREWGFEAADAL++NGYEQ + DPC+FRKVVD EV+ LIVIYVDDI+ +  E ER  L ASLQKRFPVKDLG+CTWYDGCAIE ++E GTT LSQ +Y
Sbjct:  502 RLPDGCGVWTGKAV-----KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAY 625
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K738_9PHAE4.700e-4768.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE4.850e-4572.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE7.720e-4564.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE9.430e-4572.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE1.020e-4468.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE5.000e-4472.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNU5_9PHAE2.690e-4366.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JPM8_9PHAE3.680e-4364.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE4.210e-4364.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE4.790e-4364.34Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig102contigC-linearis_contig102:108915..109523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size611
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.8610063-UTR-C-linearis_contig102:108914..1092681622927367.8610063-UTR-C-linearis_contig102:108914..109268Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 108915..109268 +
1690879657.3909955-UTR-C-linearis_contig102:108914..1092681690879657.3909955-UTR-C-linearis_contig102:108914..109268Chordaria linearis ClinC8C monoicousUTRC-linearis_contig102 108915..109268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927367.8704343-CDS-C-linearis_contig102:109268..1095231622927367.8704343-CDS-C-linearis_contig102:109268..109523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 109269..109523 +
1690879657.40155-CDS-C-linearis_contig102:109268..1095231690879657.40155-CDS-C-linearis_contig102:109268..109523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig102 109269..109523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig102.769.1prot_C-linearis_contig102.769.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig102 109269..109523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig102.769.1

>prot_C-linearis_contig102.769.1 ID=prot_C-linearis_contig102.769.1|Name=mRNA_C-linearis_contig102.769.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
MANGYEQSKADPCVFRKVVDEEVILIVIYVDDILFAGPENERRGLFASLQ
KRFPVKDLGECTWYDGCAIERNVELGTTTLSQKSY
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mRNA from alignment at C-linearis_contig102:108915..109523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig102.769.1 ID=mRNA_C-linearis_contig102.769.1|Name=mRNA_C-linearis_contig102.769.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=609bp|location=Sequence derived from alignment at C-linearis_contig102:108915..109523+ (Chordaria linearis ClinC8C monoicous)
TGTAGCAAACGAGAAGGGAACGCCCGTGTTTCACTGGGATGTGAAGCAAG
CATACACTCACTCAAAGCTGAAGGAAGAGATTTACCTGAGGTTCCCCGAC
GGCTGTGGTAGCATGTCTGGCAAGGTTCGCAAGGTTGAGCGTGCCTTGTA
CGGTCTGTTCGTTAGATGGACTTATCCACTAGACCACTCAGTCAGCGCTG
AGTGAGTGGTCTAGTGGATAAGCCCATCTAACGGACAAAAGATACGCCGG
GAGTTTGGTTCTCATCAGGTGTCGCCTTTTTTTCTAAGAAAGTGAAGAAA
GGAGAGCGCAAGCAGAGTGGGCGTGAGTGGGGGTTCGAGGCAGCTGATGC
CCTCATGGCGAACGGGTATGAGCAGTCCAAAGCTGACCCGTGCGTCTTCC
GCAAGGTCGTAGACGAAGAGGTGATTCTGATTGTCATCTATGTAGACGAC
ATCCTGTTTGCGGGGCCGGAGAATGAACGCAGGGGGTTGTTTGCCTCTCT
GCAGAAGAGATTTCCGGTGAAGGATCTTGGAGAGTGCACCTGGTACGACG
GGTGCGCGATAGAGAGGAATGTTGAGTTGGGGACGACCACTTTGTCGCAG
AAGTCGTAC
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Coding sequence (CDS) from alignment at C-linearis_contig102:108915..109523+

>mRNA_C-linearis_contig102.769.1 ID=mRNA_C-linearis_contig102.769.1|Name=mRNA_C-linearis_contig102.769.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig102:108915..109523+ (Chordaria linearis ClinC8C monoicous)
ATGGCGAACGGGTATGAGCAGTCCAAAGCTGACCCGTGCGTCTTCCGCAA
GGTCGTAGACGAAGAGGTGATTCTGATTGTCATCTATGTAGACGACATCC
TGTTTGCGGGGCCGGAGAATGAACGCAGGGGGTTGTTTGCCTCTCTGCAG
AAGAGATTTCCGGTGAAGGATCTTGGAGAGTGCACCTGGTACGACGGGTG
CGCGATAGAGAGGAATGTTGAGTTGGGGACGACCACTTTGTCGCAGAAGT
CGTACATGGCGAACGGGTATGAGCAGTCCAAAGCTGACCCGTGCGTCTTC
CGCAAGGTCGTAGACGAAGAGGTGATTCTGATTGTCATCTATGTAGACGA
CATCCTGTTTGCGGGGCCGGAGAATGAACGCAGGGGGTTGTTTGCCTCTC
TGCAGAAGAGATTTCCGGTGAAGGATCTTGGAGAGTGCACCTGGTACGAC
GGGTGCGCGATAGAGAGGAATGTTGAGTTGGGGACGACCACTTTGTCGCA
GAAGTCGTAC
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