prot_C-linearis_contig102.767.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig102.767.1
Unique Name	prot_C-linearis_contig102.767.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	235

Homology

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 1.030e-110
Identity = 169/233 (72.53%), Postives = 189/233 (81.12%), Query Frame = 0

Query:    5 VAFVMLGLVVSCAGFALPPNARRWPSNADRGPLKNSSR--CRSRT-AXXXXXXXAQMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILPAFPFA 234
            +  +MLGL+  C GFA+PP ARR   NA RG  +  S+  C S T +        +MSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAM+A+TGILVQS V FPG PPFPVS+PARPL VLKGLLS+E  +V+LFLL  G VELTIGKQDYVDRAPGELG+FG FAKPVD+EEW+KVQMAE+KHGRLAMLGV GCL QELVTG+GP+EQL  GNI   FPFA
Sbjct:    5 ITLMMLGLIAGCGGFAVPPTARRLRPNAARGCWRRPSQNGCHSSTRSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGTGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNI---FPFA 234

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.370e-53
Identity = 87/173 (50.29%), Postives = 120/173 (69.36%), Query Frame = 0

Query:   57 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            +M++++M+GAD+E+ G++DPL  SKD+ +LF+ R VELKHGRVAM+A  G+LVQS    P     PV    RPL  L  +L+  P +     L +GA EL+IGKQDY ++APG++  FG F KP D +EWEK+Q+ E+K+GRLAM+   G   QE +TGQGP+EQL  G+I P
Sbjct:   12 RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPD----PVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISP 180

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 7.340e-53
Identity = 94/173 (54.34%), Postives = 122/173 (70.52%), Query Frame = 0

Query:   57 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            +MS+ +M+G DVE+GGLFDPLGFSKDE SLFRRRAVELKHGR+ M+A  G+LVQ+ V    LP    S+P RP+  L  +L   P + +  LL IG +ELT G QDY ++APG+LG FG   KP D  E  ++Q+ E+K+GRLAM+G+ G L QE +T QGP+EQL  G+  P
Sbjct:   40 RMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH---LPDAVFSNP-RPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSP 208

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 167 bits (424), Expect = 1.630e-48
Identity = 92/174 (52.87%), Postives = 117/174 (67.24%), Query Frame = 0

Query:   57 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSL-VRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            +MS+ EMIGADVE+GG+FDPL FS+DE SLFRRRAVELKHGR+AM+A  G  VQS  V  P     PV    RPL  L  +L+  P +    +  I A+EL  G+QDY ++APG+LG FG   K  D EE+ K Q+ E+K+GRLAM+G+ G + QE +TGQ   EQ+  GNI P
Sbjct:   43 KMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPD----PVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINP 212

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.570e-48
Identity = 87/169 (51.48%), Postives = 115/169 (68.05%), Query Frame = 0

Query:   63 MIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDY--VDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            M+GA  E+GG+FDPLG + DE SL+RRR  ELKHGRV M+A  G+LVQS V+FP  P        RPL  L  +    P  +L  + ++G +ELTIG++DY   +  PG+LGDF   A+P D + W + Q+ E+KHGRLA LG++G LAQELVT +GP+EQL KG+I P
Sbjct:    1 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPD-PDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINP 168

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 163 bits (413), Expect = 9.490e-48
Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 0

Query:   74 FDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQ 221
            +DPLGFSKDE SLFRRR VELKHGR+ M+A  G+ VQ+ +  P     PV    RP+  L  + +  P ++   +L IGA+EL+IGKQDY ++APG+LG FG FAKP D  EWEKVQ+ E+K+GRLAM+ + G L QE +T QGPLEQ
Sbjct:    1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPD----PVFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.030e-47
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 0

Query:   57 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            +M++ EMIG+DVE+ G+FDPLG +KDE SL+R R +ELKHGRVAM+A  G LVQS   F  LP    S+P RPL  L  + S  P +     L IGA+ELTIGKQD  +RAPG++G FG    P D E++  +Q+ E+K+GRLAM+ + G   QE +TGQGP+EQL +G+  P
Sbjct:   31 RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQS---FYHLPDEVFSNP-RPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSP 198

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.710e-47
Identity = 86/173 (49.71%), Postives = 117/173 (67.63%), Query Frame = 0

Query:   59 SIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDY--VDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            ++ EM+GA  E+GG+FDPLG + DE SL+RRR  ELKHGRV M+A  G+LVQS V+FP  P        RPL  L  +    P  +L  + ++G +ELTIG++DY   +  PG+LG+    A+P D + W + Q+ E+KHGRLA LG++G LAQELVT +GP+EQL KG+I P
Sbjct:   52 AVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPD-PDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINP 223

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.210e-47
Identity = 91/172 (52.91%), Postives = 113/172 (65.70%), Query Frame = 0

Query:   58 MSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            MS  +MIG DVE+GGLFDPLGFSKDE SL++ R VELKHGRVAM+A  G LVQS    P      V    RPL  L  LLS  P ++L  ++ I  +E+T GKQD  + APG+LG FG   KP    E   VQ+ E+K+GRLAM+ + G   QEL+TGQGP+EQ+  G+I P
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPD----DVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD-PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISP 167

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BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.040e-44
Identity = 86/173 (49.71%), Postives = 119/173 (68.79%), Query Frame = 0

Query:   57 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 229
            +MS+ E+IGAD E+GG++DP GF+KD+ +L++ R VELKHGRVAM+A  G+LVQS V  P  P F  +D ARP      L SS P+++    L  GAVEL + KQD  ++APG+LG FG +  P   EE E +Q+ E+K+GRLAM+ + G   QE +TGQGP+EQ+  G++ P
Sbjct:   39 RMSVEELIGADTETGGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPD-PVF--ADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQD-PEKAPGDLG-FGAY--PDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSP 204

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot

BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JT49_9PHAE	1.030e-110	72.53	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A835ZIK7_9STRA	4.370e-53	50.29	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A835ZAI4_9STRA	7.340e-53	54.34	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A0G4GDB0_VITBC	1.630e-48	52.87	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
D8LBT8_ECTSI	2.570e-48	51.48	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D5KBP8_ELYCH	9.490e-48	55.41	Light harvesting complex protein 3 (Fragment) n=4 ...	[more]
W7U405_9STRA	1.030e-47	52.02	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A6H5KVZ6_9PHAE	2.710e-47	49.71	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
W7TRI0_9STRA	3.210e-47	52.91	Light-harvesting protein n=1 Tax=Nannochloropsis g...	[more]
A0A835Z571_9STRA	5.040e-44	49.71	Light harvesting complex protein n=1 Tax=Tribonema...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 50..230 e-value: 4.2E-34 score: 120.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 71..211 e-value: 9.2E-27 score: 94.5
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 46..219
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..234
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..18 score: 0.736
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 70..224
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 46..219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig102	contig	C-linearis_contig102:44864..47701 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig102.767.1	mRNA_C-linearis_contig102.767.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig102 44234..47759 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig102.767.1 ID=prot_C-linearis_contig102.767.1|Name=mRNA_C-linearis_contig102.767.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=235bp
MIPGVAFVMLGLVVSCAGFALPPNARRWPSNADRGPLKNSSRCRSRTAAA
AAAAAAQMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVA
MIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLV
IGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLA
MLGVSGCLAQELVTGQGPLEQLFKGNILPAFPFA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln