mRNA_C-linearis_contig102.767.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE) HSP 1 Score: 326 bits (835), Expect = 5.200e-107 Identity = 169/233 (72.53%), Postives = 189/233 (81.12%), Query Frame = 2 Query: 71 VAFVMLGLVVSCAGFALPPNARRWPSNADRGPLKNSSR--CRSRT-AXXXXXXXAQMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILPAFPFA 760
+ +MLGL+ C GFA+PP ARR NA RG + S+ C S T + +MSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAM+A+TGILVQS V FPG PPFPVS+PARPL VLKGLLS+E +V+LFLL G VELTIGKQDYVDRAPGELG+FG FAKPVD+EEW+KVQMAE+KHGRLAMLGV GCL QELVTG+GP+EQL GNI FPFA
Sbjct: 5 ITLMMLGLIAGCGGFAVPPTARRLRPNAARGCWRRPSQNGCHSSTRSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGTGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNI---FPFA 234
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA) HSP 1 Score: 177 bits (450), Expect = 5.530e-50 Identity = 87/173 (50.29%), Postives = 120/173 (69.36%), Query Frame = 2 Query: 227 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
+M++++M+GAD+E+ G++DPL SKD+ +LF+ R VELKHGRVAM+A G+LVQS P PV RPL L +L+ P + L +GA EL+IGKQDY ++APG++ FG F KP D +EWEK+Q+ E+K+GRLAM+ G QE +TGQGP+EQL G+I P
Sbjct: 12 RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPD----PVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISP 180
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA) HSP 1 Score: 178 bits (451), Expect = 9.360e-50 Identity = 94/173 (54.34%), Postives = 122/173 (70.52%), Query Frame = 2 Query: 227 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
+MS+ +M+G DVE+GGLFDPLGFSKDE SLFRRRAVELKHGR+ M+A G+LVQ+ V LP S+P RP+ L +L P + + LL IG +ELT G QDY ++APG+LG FG KP D E ++Q+ E+K+GRLAM+G+ G L QE +T QGP+EQL G+ P
Sbjct: 40 RMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH---LPDAVFSNP-RPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSP 208
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC) HSP 1 Score: 167 bits (422), Expect = 1.610e-45 Identity = 92/174 (52.87%), Postives = 117/174 (67.24%), Query Frame = 2 Query: 227 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSL-VRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
+MS+ EMIGADVE+GG+FDPL FS+DE SLFRRRAVELKHGR+AM+A G VQS V P PV RPL L +L+ P + + I A+EL G+QDY ++APG+LG FG K D EE+ K Q+ E+K+GRLAM+G+ G + QE +TGQ EQ+ GNI P
Sbjct: 43 KMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPD----PVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINP 212
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI) HSP 1 Score: 165 bits (417), Expect = 2.430e-45 Identity = 87/169 (51.48%), Postives = 115/169 (68.05%), Query Frame = 2 Query: 245 MIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDY--VDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
M+GA E+GG+FDPLG + DE SL+RRR ELKHGRV M+A G+LVQS V+FP P RPL L + P +L + ++G +ELTIG++DY + PG+LGDF A+P D + W + Q+ E+KHGRLA LG++G LAQELVT +GP+EQL KG+I P
Sbjct: 1 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPD-PDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINP 168
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH) HSP 1 Score: 163 bits (412), Expect = 6.030e-45 Identity = 82/148 (55.41%), Postives = 105/148 (70.95%), Query Frame = 2 Query: 278 FDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQ 721
+DPLGFSKDE SLFRRR VELKHGR+ M+A G+ VQ+ + P PV RP+ L + + P ++ +L IGA+EL+IGKQDY ++APG+LG FG FAKP D EWEKVQ+ E+K+GRLAM+ + G L QE +T QGPLEQ
Sbjct: 1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPD----PVFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA) HSP 1 Score: 164 bits (416), Expect = 9.620e-45 Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 2 Query: 227 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
+M++ EMIG+DVE+ G+FDPLG +KDE SL+R R +ELKHGRVAM+A G LVQS F LP S+P RPL L + S P + L IGA+ELTIGKQD +RAPG++G FG P D E++ +Q+ E+K+GRLAM+ + G QE +TGQGP+EQL +G+ P
Sbjct: 31 RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQS---FYHLPDEVFSNP-RPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSP 198
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.510e-44 Identity = 86/173 (49.71%), Postives = 117/173 (67.63%), Query Frame = 2 Query: 233 SIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDY--VDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
++ EM+GA E+GG+FDPLG + DE SL+RRR ELKHGRV M+A G+LVQS V+FP P RPL L + P +L + ++G +ELTIG++DY + PG+LG+ A+P D + W + Q+ E+KHGRLA LG++G LAQELVT +GP+EQL KG+I P
Sbjct: 52 AVSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPD-PDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINP 223
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA) HSP 1 Score: 162 bits (410), Expect = 2.840e-44 Identity = 91/172 (52.91%), Postives = 113/172 (65.70%), Query Frame = 2 Query: 230 MSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
MS +MIG DVE+GGLFDPLGFSKDE SL++ R VELKHGRVAM+A G LVQS P V RPL L LLS P ++L ++ I +E+T GKQD + APG+LG FG KP E VQ+ E+K+GRLAM+ + G QEL+TGQGP+EQ+ G+I P
Sbjct: 1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPD----DVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD-PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISP 167
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA) HSP 1 Score: 155 bits (392), Expect = 3.700e-41 Identity = 86/173 (49.71%), Postives = 119/173 (68.79%), Query Frame = 2 Query: 227 QMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMIAITGILVQSLVRFPGLPPFPVSDPARPLVVLKGLLSSEPKSVLLFLLVIGAVELTIGKQDYVDRAPGELGDFGGFAKPVDREEWEKVQMAEIKHGRLAMLGVSGCLAQELVTGQGPLEQLFKGNILP 745
+MS+ E+IGAD E+GG++DP GF+KD+ +L++ R VELKHGRVAM+A G+LVQS V P P F +D ARP L SS P+++ L GAVEL + KQD ++APG+LG FG + P EE E +Q+ E+K+GRLAM+ + G QE +TGQGP+EQ+ G++ P
Sbjct: 39 RMSVEELIGADTETGGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPD-PVF--ADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQD-PEKAPGDLG-FGAY--PDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSP 204 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.767.1 >prot_C-linearis_contig102.767.1 ID=prot_C-linearis_contig102.767.1|Name=mRNA_C-linearis_contig102.767.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=235bp MIPGVAFVMLGLVVSCAGFALPPNARRWPSNADRGPLKNSSRCRSRTAAAback to top mRNA from alignment at C-linearis_contig102:44234..47759- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.767.1 ID=mRNA_C-linearis_contig102.767.1|Name=mRNA_C-linearis_contig102.767.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3526bp|location=Sequence derived from alignment at C-linearis_contig102:44234..47759- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:44234..47759- >mRNA_C-linearis_contig102.767.1 ID=mRNA_C-linearis_contig102.767.1|Name=mRNA_C-linearis_contig102.767.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at C-linearis_contig102:44234..47759- (Chordaria linearis ClinC8C monoicous)back to top |