prot_C-linearis_contig101.764.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig101.764.1
Unique Name	prot_C-linearis_contig101.764.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	356

Homology

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BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Match: D7FJK5_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK5_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 1.460e-110
Identity = 214/355 (60.28%), Postives = 249/355 (70.14%), Query Frame = 0

Query:    1 MSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEKQALQRADENTATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQSQARQQQRFSKLEERGVTILLPREHSQRPQETTAPPNREMVEPEEXXXXXXXX--DRELELVAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVRLPGGVFLQGRFNPDETWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMAPPVRVFPRDAT-SLKASNARAPACILHLRWGSENAQDKSWAEKLEESMSQ-TMGSSVHPRVPYSSRYDIPEAISSKRPQGPHHAKEGAHAAGLESGSEQESAE 351
            MS+LGFDL   G G GPCFQ R+GAP E  ++QALDLLSAR     ES + A +      A P  AS  GFNPF TAFSRKSRT+LQERAE GLA+L  SQA++QQRFS LEER VTILLP    Q+P E +A    EM E E+           RELELVAQLWRERM  DEVERFET AAKKLRLLR+AK YPYVL R+RLPGGV+LQ RFN  E+ ET+YQV G+ LS+EA     D +LC+NFELFMAPP RV PRD+T SL+ SN  APAC+LHLRW S  A  ++WA+  EE +S+ TM     PRVPYSSR D+PEAISS+RPQ    A+EGA   G ES S +E+ E
Sbjct:   88 MSALGFDL-NPGTGDGPCFQARTGAPVETDVRQALDLLSARLLHQSESGRPAAE------AEPREAS--GFNPFTTAFSRKSRTRLQERAEQGLAHLSYSQAKRQQRFSTLEERLVTILLP----QQPHEASA----EMEEQEQDGEQGEADAEQRELELVAQLWRERMGNDEVERFETRAAKKLRLLRTAKSYPYVLCRIRLPGGVYLQARFNSKESLETIYQVFGQVLSMEAEV---DGQLCHNFELFMAPPTRVLPRDSTQSLEDSNILAPACVLHLRWKSGEAGLQTWAQNFEERLSRATMDGLALPRVPYSSRLDVPEAISSRRPQELPPAEEGADDDGSESESAEEAPE 422

[Close]

BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Match: A0A835YNR5_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.020e-12
Identity = 95/358 (26.54%), Postives = 151/358 (42.18%), Query Frame = 0

Query:    1 MSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEKQALQRADENT----------------ATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQSQARQQQRFSKLEERGVTILLPR--EHSQRPQETTAPPNREMVEPEEXXXXXXXXDRELEL---------------VAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVRLPGGVFLQGRFNPDE-TWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMAPPVRVFPRDATSLKASNARAPACILHLRW--GSENAQDKSWAEKLEESMSQTMGSSVHPRVPYSSRYDIPEAIS 322
            M +LGF+L  +G G GP F  R  A           LL   +A L+E E  AL +   ++                A   A+++S FNP+A+AFSRK++T++Q+            +     RF K+E+R +T+L P   + +     T+A  N  +   E           E +                V Q  R   A+ + + F ++AA++L  LR+A++  Y L+ VR P GV LQ R+N  E T   V  V+  SL  E  +          F L    P R    D   L+ +   A A ++HL+W  G E     + AE +    ++ +  +         +YD+P  I+
Sbjct:   55 MMALGFELEDRGDGRGPAFVLRGDADRS--------LLELAQALLQE-ELAALGKGSVSSSXXXXXXXXXXXXXIGAIAGASAQSDFNPYASAFSRKAKTRVQDXXXXXXXXXXXQRRAHLLRFDKMEDRNITVLQPLTGKPATGAAATSADANASLSSSEADAASSGDHSSEYDXXXXXXXXLSAATASAVLQAIRSSRARQQTQPFASAAARRLHALRAARLRAYALVNVRFPDGVQLQARYNAQEDTVGHVVDVVRHSLRREVRHLP--------FRLSALGPTRALLPDQL-LQEAGMVAAANVVHLKWEAGEEAKSSAAMAETMSVLRAELVQGARCLAAARREQYDVPPPIT 394

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot

BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FJK5_ECTSI	1.460e-110	60.28	UBX domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835YNR5_9STRA	6.020e-12	26.54	UBX domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..55
None	No IPR available	GENE3D	3.10.20.90		coord: 186..278 e-value: 2.0E-6 score: 29.8
None	No IPR available	PANTHER	PTHR46467	FAMILY NOT NAMED	coord: 46..314
IPR001012	UBX domain	PFAM	PF00789	UBX	coord: 193..264 e-value: 6.1E-5 score: 23.2
IPR001012	UBX domain	PROSITE	PS50033	UBX	coord: 190..256 score: 9.415
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 174..265

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig101	contig	C-linearis_contig101:607856..609820 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig101.764.1	mRNA_C-linearis_contig101.764.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig101 607392..610098 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig101.764.1 ID=prot_C-linearis_contig101.764.1|Name=mRNA_C-linearis_contig101.764.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=356bp
MSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEK
QALQRADENTATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQS
QARQQQRFSKLEERGVTILLPREHSQRPQETTAPPNREMVEPEEQEEEEE
EEDRELELVAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVR
LPGGVFLQGRFNPDETWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMA
PPVRVFPRDATSLKASNARAPACILHLRWGSENAQDKSWAEKLEESMSQT
MGSSVHPRVPYSSRYDIPEAISSKRPQGPHHAKEGAHAAGLESGSEQESA
ESPTL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001012	UBX_dom
IPR029071	Ubiquitin-like_domsf