mRNA_C-linearis_contig101.764.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Match: D7FJK5_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK5_ECTSI) HSP 1 Score: 347 bits (890), Expect = 1.120e-110 Identity = 217/359 (60.45%), Postives = 253/359 (70.47%), Query Frame = 3 Query: 267 GIAFMSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEKQALQRADENTATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQSQARQQQRFSKLEERGVTILLPREHSQRPQETTAPPNREMVEPEEXXXXXXXX--DRELELVAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVRLPGGVFLQGRFNPDETWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMAPPVRVFPRDAT-SLKASNARAPACILHLRWGSENAQDKSWAEKLEESMSQ-TMGSSVHPRVPYSSRYDIPEAISSKRPQGPHHAKEGAHAAGLESGSEQESAE 1331
GI+FMS+LGFDL G G GPCFQ R+GAP E ++QALDLLSAR ES + A + A P AS GFNPF TAFSRKSRT+LQERAE GLA+L SQA++QQRFS LEER VTILLP Q+P E +A EM E E+ RELELVAQLWRERM DEVERFET AAKKLRLLR+AK YPYVL R+RLPGGV+LQ RFN E+ ET+YQV G+ LS+EA D +LC+NFELFMAPP RV PRD+T SL+ SN APAC+LHLRW S A ++WA+ EE +S+ TM PRVPYSSR D+PEAISS+RPQ A+EGA G ES S +E+ E
Sbjct: 84 GISFMSALGFDL-NPGTGDGPCFQARTGAPVETDVRQALDLLSARLLHQSESGRPAAE------AEPREAS--GFNPFTTAFSRKSRTRLQERAEQGLAHLSYSQAKRQQRFSTLEERLVTILLP----QQPHEASA----EMEEQEQDGEQGEADAEQRELELVAQLWRERMGNDEVERFETRAAKKLRLLRTAKSYPYVLCRIRLPGGVYLQARFNSKESLETIYQVFGQVLSMEAEV---DGQLCHNFELFMAPPTRVLPRDSTQSLEDSNILAPACVLHLRWKSGEAGLQTWAQNFEERLSRATMDGLALPRVPYSSRLDVPEAISSRRPQELPPAEEGADDDGSESESAEEAPE 422
BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Match: A0A835YNR5_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR5_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.240e-12 Identity = 97/362 (26.80%), Postives = 153/362 (42.27%), Query Frame = 3 Query: 267 GIAFMSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEKQALQRADENT----------------ATPSAASRSGFNPFATAFSRKSRTQLQERAEHGLANLCQSQARQQQRFSKLEERGVTILLPR--EHSQRPQETTAPPNREMVEPEEXXXXXXXXDRELEL---------------VAQLWRERMAQDEVERFETSAAKKLRLLRSAKVYPYVLLRVRLPGGVFLQGRFNPDE-TWETVYQVIGESLSVEAGYGTSDQRLCNNFELFMAPPVRVFPRDATSLKASNARAPACILHLRW--GSENAQDKSWAEKLEESMSQTMGSSVHPRVPYSSRYDIPEAIS 1244
GI M +LGF+L +G G GP F R A LL +A L+E E AL + ++ A A+++S FNP+A+AFSRK++T++Q+ + RF K+E+R +T+L P + + T+A N + E E + V Q R A+ + + F ++AA++L LR+A++ Y L+ VR P GV LQ R+N E T V V+ SL E + F L P R D L+ + A A ++HL+W G E + AE + ++ + + +YD+P I+
Sbjct: 51 GIGLMMALGFELEDRGDGRGPAFVLRGDADRS--------LLELAQALLQE-ELAALGKGSVSSSXXXXXXXXXXXXXIGAIAGASAQSDFNPYASAFSRKAKTRVQDXXXXXXXXXXXQRRAHLLRFDKMEDRNITVLQPLTGKPATGAAATSADANASLSSSEADAASSGDHSSEYDXXXXXXXXLSAATASAVLQAIRSSRARQQTQPFASAAARRLHALRAARLRAYALVNVRFPDGVQLQARYNAQEDTVGHVVDVVRHSLRREVRHLP--------FRLSALGPTRALLPDQL-LQEAGMVAAANVVHLKWEAGEEAKSSAAMAETMSVLRAELVQGARCLAAARREQYDVPPPIT 394 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.764.1 >prot_C-linearis_contig101.764.1 ID=prot_C-linearis_contig101.764.1|Name=mRNA_C-linearis_contig101.764.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=356bp MSSLGFDLLGQGAGHGPCFQTRSGAPAEAGLKQALDLLSARRAQLEESEKback to top mRNA from alignment at C-linearis_contig101:607392..610098- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.764.1 ID=mRNA_C-linearis_contig101.764.1|Name=mRNA_C-linearis_contig101.764.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2707bp|location=Sequence derived from alignment at C-linearis_contig101:607392..610098- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:607392..610098- >mRNA_C-linearis_contig101.764.1 ID=mRNA_C-linearis_contig101.764.1|Name=mRNA_C-linearis_contig101.764.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2136bp|location=Sequence derived from alignment at C-linearis_contig101:607392..610098- (Chordaria linearis ClinC8C monoicous)back to top |