prot_C-linearis_contig101.706.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig101.706.1
Unique Nameprot_C-linearis_contig101.706.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length46
Homology
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BLAST of mRNA_C-linearis_contig101.706.1 vs. uniprot
Match: D8LE05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE05_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.350e-10
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:   14 MEMARFTIYLTVPVIVITICSDPKNMNMLLRG 45
            MEMARF +Y++VPV+VITICSDPKNMN LLRG
Sbjct:    1 MEMARFFMYVSVPVVVITICSDPKNMNTLLRG 32
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE05_ECTSI1.350e-1081.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..45
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:12390..13418 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.706.1mRNA_C-linearis_contig101.706.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig101 12390..13418 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig101.706.1 ID=prot_C-linearis_contig101.706.1|Name=mRNA_C-linearis_contig101.706.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=46bp
MRWMHPNPRKRYGMEMARFTIYLTVPVIVITICSDPKNMNMLLRG*
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