mRNA_C-linearis_contig101.706.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.706.1
Unique NamemRNA_C-linearis_contig101.706.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig101.706.1 vs. uniprot
Match: D8LE05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE05_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.350e-10
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:   40 MEMARFTIYLTVPVIVITICSDPKNMNMLLRG 135
            MEMARF +Y++VPV+VITICSDPKNMN LLRG
Sbjct:    1 MEMARFFMYVSVPVVVITICSDPKNMNTLLRG 32
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE05_ECTSI1.350e-1081.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:12390..13418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size138
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.3337543-CDS-C-linearis_contig101:12389..124541622927359.3337543-CDS-C-linearis_contig101:12389..12454Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 12390..12454 -
1690879651.3159907-CDS-C-linearis_contig101:12389..124541690879651.3159907-CDS-C-linearis_contig101:12389..12454Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 12390..12454 -
1622927359.3732834-CDS-C-linearis_contig101:13345..134181622927359.3732834-CDS-C-linearis_contig101:13345..13418Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 13346..13418 -
1690879651.3246462-CDS-C-linearis_contig101:13345..134181690879651.3246462-CDS-C-linearis_contig101:13345..13418Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 13346..13418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.706.1prot_C-linearis_contig101.706.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 12390..13418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.706.1

>prot_C-linearis_contig101.706.1 ID=prot_C-linearis_contig101.706.1|Name=mRNA_C-linearis_contig101.706.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=46bp
MRWMHPNPRKRYGMEMARFTIYLTVPVIVITICSDPKNMNMLLRG*
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mRNA from alignment at C-linearis_contig101:12390..13418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.706.1 ID=mRNA_C-linearis_contig101.706.1|Name=mRNA_C-linearis_contig101.706.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at C-linearis_contig101:12390..13418- (Chordaria linearis ClinC8C monoicous)
ATGCGGTGGATGCACCCGAATCCTCGCAAGAGGTATGGCATGGAAATGGC
CCGGTTCACGATCTACCTCACGGGTGAGTGATGCACACCGCGTGTTGTGG
TATGCGTACATACGTGCATCAGTTTTCGTGTTCAGTGCATGTCGTTCCGC
CCGCAGTCGCGTGGCCAGGATATGCACACGTGGTCGGGCTTCGGGGCCAC
GGCTGTGTGCTGTGTGCCTGCTGCAGAGGCACGTAGAGAAATACTCAGCG
CACACACATGGCAGAGTTGCGGTTTGACTTTGGCTTGCACGCACCACCGG
TGAACGAACTATGTACGTTCAACAGCAGTAGGCAGGAGCCTCAACCTCTC
TTGTTCTGCCGTGGGGCCCTGACGAGTTGCGGTGGCCGTGTGCTCCTGCT
GCATGCAGGAGCTGTTTTAGGCTATCCTTCAACCCCCCCTAGAACCCGTT
GTCTACACAAGTCGACACAAGCAGCAGTACAATAGAGCACATACACACCC
CGAAGCTGAGAGGCAAAAAAACATGAGCCCAAGCGGCCATACTGTTTTTG
TGATGTGCTCTGCCGCTCTTGCGCCGTGGGGCTGCTCCGCTGCCTGTGCG
CGTGTGTATTTCTTTCTGGCTGGAGTATTGGTGTCCTCAGGTAATCCGAC
GCGCAGAAAAAGTCGCACTTTCGTCTTTGCCGACCCCTATTTGCTTGGCG
TCGGCGGAGATAGTGACTCGCTTCGCTCGTAGCAACTGAGATTTTTCATG
CCGTGAACGAAAACCAATACCAGACGCTGATTTACGACCACAAAGCACAT
TTGACTCGACGTATAGCCTCGTGGGCTCTCGATTGGGCTTGTGGTACAAT
ACATTACCACCTCCGCGCGCCAGCGTCCCTCTAATCCCCCAAACGAAATT
TCCCTCCTCCCCTTGTTCGCGACGATGTCGGCGCTTTTTGTGTCCCATCC
TGCTTCTCTTGCAGTGCCTGTGATTGTGATCACGATTTGCAGCGATCCGA
AGAACATGAATATGTTGCTACGAGGGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig101:12390..13418-

>mRNA_C-linearis_contig101.706.1 ID=mRNA_C-linearis_contig101.706.1|Name=mRNA_C-linearis_contig101.706.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at C-linearis_contig101:12390..13418- (Chordaria linearis ClinC8C monoicous)
ATGCGGTGGATGCACCCGAATCCTCGCAAGAGGTATGGCATGGAAATGGC
CCGGTTCACGATCTACCTCACGGATGCGGTGGATGCACCCGAATCCTCGC
AAGAGGTATGGCATGGAAATGGCCCGGTTCACGATCTACCTCACGGTGCC
TGTGATTGTGATCACGATTTGCAGCGATCCGAAGAACATGAATATGTTGC
TACGAGGGTGATGCCTGTGATTGTGATCACGATTTGCAGCGATCCGAAGA
ACATGAATATGTTGCTACGAGGGTGA
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