mRNA_C-linearis_contig101.755.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig101.755.1
Unique NamemRNA_C-linearis_contig101.755.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig101contigC-linearis_contig101:504709..505054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size129
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig101.755.1prot_C-linearis_contig101.755.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig101 504709..505023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.032041-CDS-C-linearis_contig101:504708..5047611622927359.032041-CDS-C-linearis_contig101:504708..504761Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 504709..504761 -
1690879651.2113354-CDS-C-linearis_contig101:504708..5047611690879651.2113354-CDS-C-linearis_contig101:504708..504761Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 504709..504761 -
1622927359.045366-CDS-C-linearis_contig101:504947..5050231622927359.045366-CDS-C-linearis_contig101:504947..505023Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 504948..505023 -
1690879651.220639-CDS-C-linearis_contig101:504947..5050231690879651.220639-CDS-C-linearis_contig101:504947..505023Chordaria linearis ClinC8C monoicousCDSC-linearis_contig101 504948..505023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927359.056534-UTR-C-linearis_contig101:505023..5050541622927359.056534-UTR-C-linearis_contig101:505023..505054Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 505024..505054 -
1690879651.2286205-UTR-C-linearis_contig101:505023..5050541690879651.2286205-UTR-C-linearis_contig101:505023..505054Chordaria linearis ClinC8C monoicousUTRC-linearis_contig101 505024..505054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig101.755.1

>prot_C-linearis_contig101.755.1 ID=prot_C-linearis_contig101.755.1|Name=mRNA_C-linearis_contig101.755.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=43bp
MEERGEDGERHSRARIHSATAKQRKGSRCEGRCQPDEEKPVEN
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mRNA from alignment at C-linearis_contig101:504709..505054-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig101.755.1 ID=mRNA_C-linearis_contig101.755.1|Name=mRNA_C-linearis_contig101.755.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=346bp|location=Sequence derived from alignment at C-linearis_contig101:504709..505054- (Chordaria linearis ClinC8C monoicous)
ACGCGCCGGGGCAGGCCTTTGGGGAGGCGACATGGAAGAACGCGGAGAAG
ATGGTGAACGGCATAGTCGGGCACGGATACACTCTGCAACGGCGAAACAA
AGAAAAGGTAGGCGAGCGTGGGCGGCTTCAAAACTTAAAACCTCCTTGAA
CTGCTGGTGCTTGTTTGGTGCGGTCCTTTCGTCCTTTTGTGCGCGCACCT
GCATGTACCCACCATTGACGCACGCACCTTGGTGTCCACCATCACATGTA
CCCCACCATTGACATCGGAAATTACGTCTCACTGCCCGCCCAGGTTCACG
CTGTGAAGGACGATGCCAACCGGATGAGGAAAAACCGGTGGAGAAC
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Coding sequence (CDS) from alignment at C-linearis_contig101:504709..505054-

>mRNA_C-linearis_contig101.755.1 ID=mRNA_C-linearis_contig101.755.1|Name=mRNA_C-linearis_contig101.755.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at C-linearis_contig101:504709..505054- (Chordaria linearis ClinC8C monoicous)
ATGGAAGAACGCGGAGAAGATGGTGAACGGCATAGTCGGGCACGGATACA
CTCTGCAACGGCGAAACAAAGAAAAGATGGAAGAACGCGGAGAAGATGGT
GAACGGCATAGTCGGGCACGGATACACTCTGCAACGGCGAAACAAAGAAA
AGGTTCACGCTGTGAAGGACGATGCCAACCGGATGAGGAAAAACCGGTGG
AGAACGTTCACGCTGTGAAGGACGATGCCAACCGGATGAGGAAAAACCGG
TGGAGAAC
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