prot_C-linearis_contig10.509.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig10.509.1
Unique Name	prot_C-linearis_contig10.509.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	302

Homology

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BLAST of mRNA_C-linearis_contig10.509.1 vs. uniprot
Match: D7FZX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZX5_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 2.610e-142
Identity = 215/301 (71.43%), Postives = 247/301 (82.06%), Query Frame = 0

Query:    1 MKPPQTPTRAGGQGAGRSKGPAPRTPSVNRLAVAERGVGARVERGEAAPVEAPFAQSARAWRSGGDRKIMFDNRGGAALTPEALRPMALVAILHVCSWLLLATGMFQIVVSKLGDFRFPLHWVGVLLMLLGLVTILVRVYTNRCGTKPDWAGFIAVFTGAACMASWLLADGPLYRRVKAAERCTDENVFELCGIDEVYEDEFSQENLADTNKCVCQVASGAWDLCVDFTSDCENIPGNRRYLLMSLVTLWIGLGLSFVVAVVSMRVVASTYDAGAIAEAREKERVKEKAASASAPTAP-FG 300
            M+ P TPTR  G    +SK   PRTPS NRLAVAERGVGARVERGE APV+  F QSARAWRSGGDRKIMFDNRGG ALTPEA RP ALVAI+HVC+WLL+A GMFQIV+SK  DFR+PLHWVGVL++LLGLVT LVRVYTNRCGT P W+  IAV T AAC++SWLLADGPLY+ VK AE CTDENV ELCG ++V E+    E++ D N CVC+VASGAWDLCVDFTS+CENI  +RR+LLMSL++LW+GLGL+F+VAVVSMRVVA+TYDA AIA+A EK+ +K K A  SA  AP FG
Sbjct:    1 MEAPSTPTRGNGVVQTKSKAGGPRTPSANRLAVAERGVGARVERGETAPVDPHFQQSARAWRSGGDRKIMFDNRGGHALTPEAQRPPALVAIMHVCAWLLIAAGMFQIVMSKCADFRYPLHWVGVLMVLLGLVTALVRVYTNRCGTNPKWSAGIAVATVAACLSSWLLADGPLYKEVKTAEVCTDENVRELCGYEDVDEN-LLPEDIPDLNVCVCRVASGAWDLCVDFTSNCENITSDRRFLLMSLISLWVGLGLAFIVAVVSMRVVATTYDAAAIAKAEEKKLMKAKFAKDSATAAPPFG 300

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig10.509.1 vs. uniprot

BLAST of mRNA_C-linearis_contig10.509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FZX5_ECTSI	2.610e-142	71.43	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 241..262
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 111..121
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 142..149
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 122..141
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..87
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 150..169
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 263..301
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 88..110
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 170..240
None	No IPR available	TMHMM	TMhelix		coord: 150..169
None	No IPR available	TMHMM	TMhelix		coord: 241..263
None	No IPR available	TMHMM	TMhelix		coord: 88..110
None	No IPR available	TMHMM	TMhelix		coord: 120..137

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig10	contig	C-linearis_contig10:1588352..1592471 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig10.509.1	mRNA_C-linearis_contig10.509.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig10 1588187..1592599 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig10.509.1 ID=prot_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp
MKPPQTPTRAGGQGAGRSKGPAPRTPSVNRLAVAERGVGARVERGEAAPV
EAPFAQSARAWRSGGDRKIMFDNRGGAALTPEALRPMALVAILHVCSWLL
LATGMFQIVVSKLGDFRFPLHWVGVLLMLLGLVTILVRVYTNRCGTKPDW
AGFIAVFTGAACMASWLLADGPLYRRVKAAERCTDENVFELCGIDEVYED
EFSQENLADTNKCVCQVASGAWDLCVDFTSDCENIPGNRRYLLMSLVTLW
IGLGLSFVVAVVSMRVVASTYDAGAIAEAREKERVKEKAASASAPTAPFG
V*