mRNA_C-linearis_contig10.509.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.509.1 vs. uniprot
Match: D7FZX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZX5_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 3.500e-141 Identity = 215/301 (71.43%), Postives = 247/301 (82.06%), Query Frame = 3 Query: 129 MKPPQTPTRAGGQGAGRSKGPAPRTPSVNRLAVAERGVGARVERGEAAPVEAPFAQSARAWRSGGDRKIMFDNRGGAALTPEALRPMALVAILHVCSWLLLATGMFQIVVSKLGDFRFPLHWVGVLLMLLGLVTILVRVYTNRCGTKPDWAGFIAVFTGAACMASWLLADGPLYRRVKAAERCTDENVFELCGIDEVYEDEFSQENLADTNKCVCQVASGAWDLCVDFTSDCENIPGNRRYLLMSLVTLWIGLGLSFVVAVVSMRVVASTYDAGAIAEAREKERVKEKAASASAPTAP-FG 1028
M+ P TPTR G +SK PRTPS NRLAVAERGVGARVERGE APV+ F QSARAWRSGGDRKIMFDNRGG ALTPEA RP ALVAI+HVC+WLL+A GMFQIV+SK DFR+PLHWVGVL++LLGLVT LVRVYTNRCGT P W+ IAV T AAC++SWLLADGPLY+ VK AE CTDENV ELCG ++V E+ E++ D N CVC+VASGAWDLCVDFTS+CENI +RR+LLMSL++LW+GLGL+F+VAVVSMRVVA+TYDA AIA+A EK+ +K K A SA AP FG
Sbjct: 1 MEAPSTPTRGNGVVQTKSKAGGPRTPSANRLAVAERGVGARVERGETAPVDPHFQQSARAWRSGGDRKIMFDNRGGHALTPEAQRPPALVAIMHVCAWLLIAAGMFQIVMSKCADFRYPLHWVGVLMVLLGLVTALVRVYTNRCGTNPKWSAGIAVATVAACLSSWLLADGPLYKEVKTAEVCTDENVRELCGYEDVDEN-LLPEDIPDLNVCVCRVASGAWDLCVDFTSNCENITSDRRFLLMSLISLWVGLGLAFIVAVVSMRVVATTYDAAAIAKAEEKKLMKAKFAKDSATAAPPFG 300 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.509.1 >prot_C-linearis_contig10.509.1 ID=prot_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp MKPPQTPTRAGGQGAGRSKGPAPRTPSVNRLAVAERGVGARVERGEAAPVback to top mRNA from alignment at C-linearis_contig10:1588187..1592599- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.509.1 ID=mRNA_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4413bp|location=Sequence derived from alignment at C-linearis_contig10:1588187..1592599- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:1588187..1592599- >mRNA_C-linearis_contig10.509.1 ID=mRNA_C-linearis_contig10.509.1|Name=mRNA_C-linearis_contig10.509.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig10:1588187..1592599- (Chordaria linearis ClinC8C monoicous)back to top |