prot_C-linearis_contig10.453.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.453.1
Unique Nameprot_C-linearis_contig10.453.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length97
Homology
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 5.960e-35
Identity = 58/98 (59.18%), Postives = 75/98 (76.53%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 95
            M+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HHL    PS   I+  +
Sbjct:  123 MTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVI 220          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JUR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.840e-34
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            ++YEDVK  +YR  W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct:  221 LTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 303          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.210e-33
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            M+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH
Sbjct:  109 MTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHH 191          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.050e-33
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH---LGPSPIRIQAGV 95
            M+Y+DV   +Y+ +WE A+KKE+D HDKTGTF+ +  +P+GRK + SKWVF+WK NE G+I DFKARMVARGFS+I G+D+HH     PS   I+  +
Sbjct:    1 MTYKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVI 98          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.730e-33
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            ++YEDVK  +YR  W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct:  737 LTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 819          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.830e-33
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            ++YEDVK  +YR  W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 1290 LTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 1372          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.170e-32
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            M+Y+DV   + + +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQIHG+D+HH
Sbjct:  109 MTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHH 191          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.250e-32
Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            M+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK  E G+I DFKARMVARGFS+I G+D+HH
Sbjct:   17 MTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHH 99          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.950e-32
Identity = 52/82 (63.41%), Postives = 69/82 (84.15%), Query Frame = 0
Query:    2 SYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            +Y+DV+  +Y+ +WE A++KE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH
Sbjct:   75 TYKDVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHH 156          
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K088_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K088_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.160e-31
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 0
Query:    1 MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 83
            M+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKAR VARGF Q+ G+D+HH
Sbjct:   56 MTYKDVMCSKYKIFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARTVARGFFQVPGIDFHH 138          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K282_9PHAE5.960e-3559.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUR2_9PHAE2.840e-3469.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE2.210e-3365.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LAZ3_9PHAE4.050e-3355.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE9.730e-3369.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE9.830e-3369.88Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNP9_9PHAE1.170e-3265.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE1.250e-3262.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEA7_9PHAE4.950e-3263.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K088_9PHAE1.160e-3161.45Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 37..85
e-value: 2.9E-11
score: 43.5
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 14..82
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 14..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:453737..454027 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.453.1mRNA_C-linearis_contig10.453.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 453476..454151 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.453.1 ID=prot_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWV
FAWKINELGVIADFKARMVARGFSQIHGVDYHHLGPSPIRIQAGVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like