mRNA_C-linearis_contig10.453.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.290e-43 Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 1 Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HHL PS I+ +
Sbjct: 109 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVI 220
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 162 bits (411), Expect = 2.300e-42 Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1 Query: 214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
+PSPIGQKPNDVEALP++YEDVK +YR W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 721 IPSPIGQKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 819
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 162 bits (411), Expect = 2.400e-42 Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1 Query: 214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
+PSPIGQKPNDVEALP++YEDVK +YR W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 1274 IPSPIGQKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 1372
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE) HSP 1 Score: 153 bits (386), Expect = 5.850e-42 Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH PS I+ +
Sbjct: 95 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVI 206
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE) HSP 1 Score: 149 bits (375), Expect = 3.680e-41 Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1 Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK E G+I DFKARMVARGFS+I G+D+HH PS I +
Sbjct: 3 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVI 114
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE) HSP 1 Score: 152 bits (385), Expect = 9.520e-41 Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1 Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
SPIGQKP+DVEA+PM+Y+DV + + +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQIHG+D+HH
Sbjct: 95 SPIGQKPSDVEAVPMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHH 191
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JUR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR2_9PHAE) HSP 1 Score: 149 bits (376), Expect = 5.870e-40 Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1 Query: 232 QKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
+KPNDVEALP++YEDVK +YR W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 211 KKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 303
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JVF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF9_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.380e-39 Identity = 64/112 (57.14%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH---LGPSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y+DV R +Y+ +WE +KK++DGHDKTGTF+ + +P+GRK + SKWVF+W+ NE G+I DFK RMV RGF QI G+D+HH + PS I+A +
Sbjct: 89 SPIGQKPSDVEAVPMTYKDVTRSKYKVFWEATMKKDIDGHDKTGTFTNVKELPDGRKAIGSKWVFSWRTNEKGLIVDFKVRMVPRGFPQIPGIDFHHSYSVCPSAASIKAVI 200
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.590e-39 Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 1 Query: 214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
+ SPIGQKP+DVEA+PM+Y+DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH PS I+ +
Sbjct: 344 ITSPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVI 457
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE) HSP 1 Score: 151 bits (382), Expect = 3.460e-39 Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
SPIGQKP+DVEA+PM+Y DV +Y+ +WE A+KKE+DGHDKTGTF+ + +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D++H PS I+ +
Sbjct: 295 SPIGQKPSDVEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSSACPSAASIKTAI 406 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.453.1 >prot_C-linearis_contig10.453.1 ID=prot_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVback to top mRNA from alignment at C-linearis_contig10:453476..454151+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.453.1 ID=mRNA_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=676bp|location=Sequence derived from alignment at C-linearis_contig10:453476..454151+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:453476..454151+ >mRNA_C-linearis_contig10.453.1 ID=mRNA_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig10:453476..454151+ (Chordaria linearis ClinC8C monoicous)back to top |