mRNA_C-linearis_contig10.453.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.453.1
Unique NamemRNA_C-linearis_contig10.453.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.290e-43
Identity = 70/112 (62.50%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:  220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
            SPIGQKP+DVEA+PM+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HHL    PS   I+  +
Sbjct:  109 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVI 220
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.300e-42
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:  214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
            +PSPIGQKPNDVEALP++YEDVK  +YR  W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct:  721 IPSPIGQKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 819
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.400e-42
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:  214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
            +PSPIGQKPNDVEALP++YEDVK  +YR  W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct: 1274 IPSPIGQKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 1372
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 5.850e-42
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
            SPIGQKP+DVEA+PM+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH     PS   I+  +
Sbjct:   95 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVI 206
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 3.680e-41
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1 
Query:  220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
            SPIGQKP+DVEA+PM+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK  E G+I DFKARMVARGFS+I G+D+HH     PS   I   +
Sbjct:    3 SPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVI 114
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 9.520e-41
Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:  220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
            SPIGQKP+DVEA+PM+Y+DV   + + +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQIHG+D+HH
Sbjct:   95 SPIGQKPSDVEAVPMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHH 191
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JUR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR2_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 5.870e-40
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:  232 QKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH 510
            +KPNDVEALP++YEDVK  +YR  W+EAIKKEMDGH+KTGTFS I+ +PEGRK VS+KWVF +K +E G+I DFKAR+VARGFSQ+HG DYHH
Sbjct:  211 KKPNDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHH 303
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JVF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF9_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.380e-39
Identity = 64/112 (57.14%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:  220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHH---LGPSPIRIQAGV 546
            SPIGQKP+DVEA+PM+Y+DV R +Y+ +WE  +KK++DGHDKTGTF+ +  +P+GRK + SKWVF+W+ NE G+I DFK RMV RGF QI G+D+HH   + PS   I+A +
Sbjct:   89 SPIGQKPSDVEAVPMTYKDVTRSKYKVFWEATMKKDIDGHDKTGTFTNVKELPDGRKAIGSKWVFSWRTNEKGLIVDFKVRMVPRGFPQIPGIDFHHSYSVCPSAASIKAVI 200
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.590e-39
Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:  214 VPSPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
            + SPIGQKP+DVEA+PM+Y+DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D+HH     PS   I+  +
Sbjct:  344 ITSPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVI 457
[Close]
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Match: A0A6H5JXX7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX7_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.460e-39
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:  220 SPIGQKPNDVEALPMSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWVFAWKINELGVIADFKARMVARGFSQIHGVDYHHLG---PSPIRIQAGV 546
            SPIGQKP+DVEA+PM+Y DV   +Y+ +WE A+KKE+DGHDKTGTF+ +  +PEGRK + SKWVF+WK NE G+I DFKARMVARGFSQI G+D++H     PS   I+  +
Sbjct:  295 SPIGQKPSDVEAVPMTYRDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFYHSSSACPSAASIKTAI 406
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K282_9PHAE1.290e-4362.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE2.300e-4273.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.400e-4273.74Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX2_9PHAE5.850e-4261.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE3.680e-4159.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNP9_9PHAE9.520e-4168.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUR2_9PHAE5.870e-4072.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVF9_9PHAE1.380e-3957.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE2.590e-3960.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXX7_9PHAE3.460e-3960.71Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:453476..454151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score71.6
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog400682.PAC_15722994
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size676
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.453.1prot_C-linearis_contig10.453.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 453737..454027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927329.039907-UTR-C-linearis_contig10:453475..4537361622927329.039907-UTR-C-linearis_contig10:453475..453736Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 453476..453736 +
1690879629.489471-UTR-C-linearis_contig10:453475..4537361690879629.489471-UTR-C-linearis_contig10:453475..453736Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 453476..453736 +
1622927329.0689626-UTR-C-linearis_contig10:454027..4541511622927329.0689626-UTR-C-linearis_contig10:454027..454151Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 454028..454151 +
1690879629.5078125-UTR-C-linearis_contig10:454027..4541511690879629.5078125-UTR-C-linearis_contig10:454027..454151Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 454028..454151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927329.0551803-CDS-C-linearis_contig10:453736..4540271622927329.0551803-CDS-C-linearis_contig10:453736..454027Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 453737..454027 +
1690879629.4985688-CDS-C-linearis_contig10:453736..4540271690879629.4985688-CDS-C-linearis_contig10:453736..454027Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 453737..454027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.453.1

>prot_C-linearis_contig10.453.1 ID=prot_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
MSYEDVKRPRYRTWWEEAIKKEMDGHDKTGTFSAIDSVPEGRKPVSSKWV
FAWKINELGVIADFKARMVARGFSQIHGVDYHHLGPSPIRIQAGVR*
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mRNA from alignment at C-linearis_contig10:453476..454151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.453.1 ID=mRNA_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=676bp|location=Sequence derived from alignment at C-linearis_contig10:453476..454151+ (Chordaria linearis ClinC8C monoicous)
CAGCAGCCATGGATGGCGAACACGGTGAGGAGGTCGTCGCAGAGTACGTC
GCGAATTCGCTGCTGGAAGAGCGCCTGGAGGAAGAACGGGAGCTCCAGGA
GTTCCTGCCCACGCCGCAGGAGCTGGAGGAGATGATGGAAGCATACGAGG
CGCTAGCTGCTCAAGTTGAAGAGGCCGCCCGGTCGACGCAAGGGCCGCCC
CAACCAGAGCTAAGTACCCTCGCCAATCGGGCAGAAACCTAACGATGTAG
AGGCTCTCCCGATGTCGTACGAGGACGTGAAACGGCCTAGGTACAGGACG
TGGTGGGAAGAGGCAATAAAGAAAGAGATGGACGGGCACGATAAAACGGG
GACCTTTTCGGCGATAGACTCAGTGCCGGAGGGGCGGAAGCCAGTCAGCT
CGAAATGGGTCTTCGCATGGAAAATCAACGAGTTGGGTGTGATCGCTGAC
TTTAAGGCTCGTATGGTTGCGCGTGGATTCTCCCAAATCCACGGGGTAGA
CTACCACCACCTAGGTCCATCCCCGATAAGGATACAGGCAGGCGTTCGAT
GACAGGGATTGCCGTGACTCTAGGAGGTGCCGTGGTGAGCCACACTAGCA
AGACGCAGCGTGTCGTGGCCCTGTCAACCGCGGAGGCAGAATATATTGCA
GCCGGGGAAGGCGTCAAGGAAGCTAT
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Coding sequence (CDS) from alignment at C-linearis_contig10:453476..454151+

>mRNA_C-linearis_contig10.453.1 ID=mRNA_C-linearis_contig10.453.1|Name=mRNA_C-linearis_contig10.453.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig10:453476..454151+ (Chordaria linearis ClinC8C monoicous)
ATGTCGTACGAGGACGTGAAACGGCCTAGGTACAGGACGTGGTGGGAAGA
GGCAATAAAGAAAGAGATGGACGGGCACGATAAAACGGGGACCTTTTCGG
CGATAGACTCAGTGCCGGAGGGGCGGAAGCCAGTCAGCTCGAAATGGGTC
TTCGCATGGAAAATCAACGAGTTGGGTGTGATCGCTGACTTTAAGGCTCG
TATGGTTGCGCGTGGATTCTCCCAAATCCACGGGGTAGACTACCACCACC
TAGGTCCATCCCCGATAAGGATACAGGCAGGCGTTCGATGAATGTCGTAC
GAGGACGTGAAACGGCCTAGGTACAGGACGTGGTGGGAAGAGGCAATAAA
GAAAGAGATGGACGGGCACGATAAAACGGGGACCTTTTCGGCGATAGACT
CAGTGCCGGAGGGGCGGAAGCCAGTCAGCTCGAAATGGGTCTTCGCATGG
AAAATCAACGAGTTGGGTGTGATCGCTGACTTTAAGGCTCGTATGGTTGC
GCGTGGATTCTCCCAAATCCACGGGGTAGACTACCACCACCTAGGTCCAT
CCCCGATAAGGATACAGGCAGGCGTTCGATGA
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