prot_C-linearis_contig10.451.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.451.1
Unique Nameprot_C-linearis_contig10.451.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length134
Homology
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A6H5K1E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E2_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.370e-57
Identity = 117/135 (86.67%), Postives = 121/135 (89.63%), Query Frame = 0
Query:    1 MKFATMMVALVAAVASLAVG-DAFVMPTAAPARLARNAGA-ALAPTTSQPAPSRSAGASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRKANEHKF 133
            MK ATMMVALVAA+ASLA G +AFVMP A  A   RNAG  ALAP  SQPAPSRS+GASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRA NLRKDKIQRSR+RKANEHKF
Sbjct:    1 MKLATMMVALVAAIASLAAGGNAFVMPPAGVA--GRNAGRQALAPAPSQPAPSRSSGASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRAMNLRKDKIQRSRERKANEHKF 133          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A835YQE4_9STRA (Ribosomal protein S21-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-10
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 0
Query:   62 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRK-ANEH 131
            + VKIV+G+ E+VE+AL RF+R V+RSGH+QELR++R FET  ERKKRK     ++ +I RS+ RK AN++
Sbjct:   44 MEVKIVVGDGESVESALNRFKRAVARSGHMQELRYRRYFETTQERKKRKATLARKRARIARSKARKFANDY 114          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A835ZBS8_9STRA (Chloroplast 30S ribosomal protein 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.390e-10
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 0
Query:   17 LAVGDAFVMPTAAPARLARNAGAALAPTTSQPAPSRSAGASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRK 127
            LAV +AF M + A ++L +   AA   T S               + VKIV+G+ E+VE+AL RF+R V RSGH+QEL+++R FET  ERKKRK     ++ +I RS+ RK
Sbjct:   12 LAVSNAFTMTSFAGSQLQQRIAAARPSTLS---------------MEVKIVVGDGESVESALTRFKRAVGRSGHMQELKYRRYFETTQERKKRKATLARKRARIARSKMRK 107          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: UPI00037B4196 (30S ribosomal protein S21 n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00037B4196)

HSP 1 Score: 50.8 bits (120), Expect = 4.630e-6
Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 0
Query:   65 KIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRAT 113
            ++V+GE EN+E+AL RF+R VSRSG L +++ +R+FET  E++KRK +T
Sbjct:    3 QVVIGENENIESALRRFKRQVSRSGILADVKSRRHFETPLEKRKRKAST 51          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: R7QFR2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR2_CHOCR)

HSP 1 Score: 50.8 bits (120), Expect = 5.990e-6
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 0
Query:   62 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQR 122
            ++V +++G+ E VE+A+ RF++ VS+SGHL ELR +R FET  E++ RK A   RK KI R
Sbjct:    1 MDVTVIVGDNEPVESAIRRFKKDVSKSGHLFELRRRRYFETNTEKRIRKAAAARRKAKIAR 61          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A7S1XR96_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR96_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.000e-6
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 0
Query:   61 ALNV-KIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRKANEH 131
            ALNV KI +GEEE ++ AL RF+R+V RSGH+Q LR +R FE   E+KKR++    R+ +I R +++K   H
Sbjct:   27 ALNVVKINVGEEEPIDDALKRFKRSVLRSGHMQLLRRRRTFEKNPEKKKREQGEKERRGRIMRLKNQKYKVH 98          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A7S1U4W2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.580e-6
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 0
Query:   61 ALNV-KIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRSRDRKANEH 131
            ALNV KI +GEEE ++ AL RF+R+V RSGH+Q LR +R FE   E+KKR++    R+ +I R +++K   H
Sbjct:   38 ALNVVKINVGEEEPIDDALKRFKRSVLRSGHMQLLRRRRTFEKNPEKKKREQGEKERRGRIMRLKNQKYKVH 109          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A2V3J354_9FLOR (30S ribosomal protein S21 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J354_9FLOR)

HSP 1 Score: 50.8 bits (120), Expect = 9.930e-6
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0
Query:   62 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRKRATNLRKDKIQRS 123
            + V +++G+ E +E AL RF++ V++SGHL ELR +R FET  ER+ RK A   RK K+ R+
Sbjct:   22 MEVTVIIGDSEPIEGALRRFKKEVTKSGHLFELRRRRYFETNTERRIRKAAAAKRKAKLSRN 83          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A1Z5J736_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J736_FISSO)

HSP 1 Score: 51.2 bits (121), Expect = 1.020e-5
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
Query:   62 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRK 110
            + +KIV+G+ E +E+A+ RF+R VS+SGHL ELR KR FE   ER KRK
Sbjct:   39 VKIKIVVGDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRK 87          
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Match: A0A448ZPW2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPW2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.430e-5
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0
Query:   62 LNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNFETVAERKKRK 110
            + VKI +G+ E +E+AL RF+R VS SGH+ ELR KR FE   E+KKRK
Sbjct:   39 VKVKINVGDGEPIESALRRFKRAVSNSGHMMELRHKRYFENSQEKKKRK 87          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.451.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K1E2_9PHAE1.370e-5786.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YQE4_9STRA1.040e-1054.93Ribosomal protein S21-domain-containing protein n=... [more]
A0A835ZBS8_9STRA1.390e-1043.24Chloroplast 30S ribosomal protein 21 n=1 Tax=Tribo... [more]
UPI00037B41964.630e-653.0630S ribosomal protein S21 n=1 Tax=Oscillatoria sp.... [more]
R7QFR2_CHOCR5.990e-649.18Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1XR96_9STRA6.000e-648.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U4W2_9STRA7.580e-648.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2V3J354_9FLOR9.930e-646.7730S ribosomal protein S21 n=1 Tax=Gracilariopsis c... [more]
A0A1Z5J736_FISSO1.020e-557.14Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448ZPW2_9STRA1.430e-557.14Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 66..117
e-value: 2.4E-12
score: 46.4
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 64..117
e-value: 9.5E-9
score: 33.0
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 46..125
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 63..119
score: 13.413
IPR038380Ribosomal protein S21 superfamilyGENE3D1.20.5.1150coord: 78..115
e-value: 2.2E-5
score: 25.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..133
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePRODOMPD005521coord: 77..110
e-value: 0.009
score: 86.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.78
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:422925..428703 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.451.1mRNA_C-linearis_contig10.451.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 421882..428703 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.451.1 ID=prot_C-linearis_contig10.451.1|Name=mRNA_C-linearis_contig10.451.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MKFATMMVALVAAVASLAVGDAFVMPTAAPARLARNAGAALAPTTSQPAP
SRSAGASAVGALNVKIVLGEEENVEAALMRFRRTVSRSGHLQELRWKRNF
ETVAERKKRKRATNLRKDKIQRSRDRKANEHKF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_S21
IPR038380S21_sf