prot_C-linearis_contig98.17122.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig98.17122.1
Unique Nameprot_C-linearis_contig98.17122.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length245
Homology
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BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Match: A0A6H5K045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K045_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 7.280e-65
Identity = 129/267 (48.31%), Postives = 163/267 (61.05%), Query Frame = 0 
Query:    6 LPPRTPLRSA------RRAPVGYRRSLST----------GVQQASPSR-RLAVAPLARSYSQGRDIIDSSHLDGLYFEQEXXXXXXXXXXXXXXXXEERVLPSYPLQN----FGIIDDCCGDDDS----------DSDPVEKVDQPLPAHGEHSAEEIALRRFMSTVAWGPGLAVVKHNRGKGRGRRLLKFNVEEGYLCWSGIFPP--FNKTKVSAQKLLKASRAGCLVNVKMSDQGDVLFKCARVTEAIVLQTGLNGLIRTCNNSS 239
            LPPR P   A      R  PVG+RRS S+            ++ SP R +  V P +  +    D++D+SHLDGLYFE +                +ER LP YP ++     GI+DDC  D+DS          D     ++D     +GE+SAEEIALRRFM+ VAWG GL VVK+NRG+GR RR+LKFN EEG+LCW G  PP  F+KTKV AQKLLKASR G LV V ++D+GDV F+C R+TEAIVL+ GLNG+IR CNN+S
Sbjct:    2 LPPRPPTFHAASPAKRRPVPVGFRRSSSSVNSSSRGQEEQKRELSPRRSKRLVRPQSARFHSSHDVLDTSHLDGLYFEHQRAQALLRLRQEGRR--QERKLPVYPSKSAAVKVGIVDDCDDDEDSPTAKCPASADDKFTTSELDDTR-RYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDEEGFLCWCGTLPPYAFHKTKVPAQKLLKASRLGNLVTVGIADEGDVAFRCGRLTEAIVLEVGLNGVIRACNNTS 265
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BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Match: D8LJT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT7_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.290e-27
Identity = 85/199 (42.71%), Postives = 108/199 (54.27%), Query Frame = 0 
Query:    6 LPPRTP-LRSA-----RRAPVGYRRSLST-----GVQQASPSRRLA-------VAPLARSYSQGRDIIDSSHLDGLYFEQEXXXXXXXXXXXXXXXXEERVLPSYPLQN----FGIIDDCCGDDDSDSDPVEKVDQPLPAH--------------GEHSAEEIALRRFMSTVAWGPGLAVVKHNRGKGRGRRLLKFNVE 168
            LPPR P L +A     R  PVG++RS S+       Q+    R L+       V P +  +   +D++D+SHLDGLYFE +                +ER LP YP ++     GI+DDC  DDD DS P  K  +P  AH              GE+SAEEIALRRFM+ VAWG GL VVK+NRG+GR RR+LKFN E
Sbjct:    2 LPPRPPPLHAASPAKRRSVPVGFKRSSSSVNSSSRGQEEEQKRELSPRRNNRLVRPQSARFHSSQDVLDTSHLDGLYFEHQRAQELRLRQEGRR---QERKLPVYPSKSAAVKVGIVDDC--DDDEDS-PAAK--RPASAHDKLTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDE 192
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K045_9PHAE7.280e-6548.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJT7_ECTSI3.290e-2742.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:352637..355383 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17122.1mRNA_C-linearis_contig98.17122.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig98 352540..357604 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig98.17122.1 ID=prot_C-linearis_contig98.17122.1|Name=mRNA_C-linearis_contig98.17122.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=245bp
MPVSKLPPRTPLRSARRAPVGYRRSLSTGVQQASPSRRLAVAPLARSYSQ
GRDIIDSSHLDGLYFEQEQQQLQQQQHQQRQRQREERVLPSYPLQNFGII
DDCCGDDDSDSDPVEKVDQPLPAHGEHSAEEIALRRFMSTVAWGPGLAVV
KHNRGKGRGRRLLKFNVEEGYLCWSGIFPPFNKTKVSAQKLLKASRAGCL
VNVKMSDQGDVLFKCARVTEAIVLQTGLNGLIRTCNNSSSSSKE*
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